Detailed information NTG1062156

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JH_RS24850
• Genome accession: NZ_CP171577
• Coordinates: 5018257..5019057 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP08_UID2108280008
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5013257..5024057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JH_RS24815	gspH	5013413..5013928 (+)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-
ACF8JH_RS24820	gspI	5013925..5014290 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JH_RS24825	gspJ	5014287..5014883 (+)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
ACF8JH_RS24830	gspK	5014880..5015866 (+)	987	WP_077254844.1	type II secretion system minor pseudopilin GspK	-
ACF8JH_RS24835	gspL	5015853..5017046 (+)	1194	WP_032428212.1	type II secretion system protein GspL	-
ACF8JH_RS24840	-	5017039..5017524 (+)	486	WP_004151943.1	type II secretion system protein M	-
ACF8JH_RS24845	-	5017514..5018260 (+)	747	WP_023316460.1	type II secretion system protein N	-
ACF8JH_RS24850	pilD	5018257..5019057 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8JH_RS24855	hrpB	5019105..5021534 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
ACF8JH_RS24860	thpR	5021607..5022143 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JH_RS24865	sfsA	5022143..5022859 (+)	717	WP_023342992.1	DNA/RNA nuclease SfsA	-
ACF8JH_RS24870	dksA	5023022..5023477 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1062156 ACF8JH_RS24850 WP_004145898.1 5018257..5019057(+) (pilD) [Klebsiella pneumoniae strain KP08_UID2108280008]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1062156 ACF8JH_RS24850 WP_004145898.1 5018257..5019057(+) (pilD) [Klebsiella pneumoniae strain KP08_UID2108280008]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425