Detailed information NTG1062113

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JV_RS04230
• Genome accession: NZ_CP171574
• Coordinates: 897364..898164 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP13_UID2108280009
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 892364..903164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JV_RS04210	dksA	892944..893399 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8JV_RS04215	sfsA	893562..894278 (-)	717	WP_023342992.1	DNA/RNA nuclease SfsA	-
ACF8JV_RS04220	thpR	894278..894814 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JV_RS04225	hrpB	894887..897316 (+)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
ACF8JV_RS04230	pilD	897364..898164 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8JV_RS04235	-	898161..898907 (-)	747	WP_023316460.1	type II secretion system protein N	-
ACF8JV_RS04240	-	898897..899382 (-)	486	WP_004151943.1	type II secretion system protein M	-
ACF8JV_RS04245	gspL	899375..900568 (-)	1194	WP_032428212.1	type II secretion system protein GspL	-
ACF8JV_RS04250	gspK	900555..901541 (-)	987	WP_077254844.1	type II secretion system minor pseudopilin GspK	-
ACF8JV_RS04255	gspJ	901538..902134 (-)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
ACF8JV_RS04260	gspI	902131..902496 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JV_RS04265	gspH	902493..903008 (-)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1062113 ACF8JV_RS04230 WP_004145898.1 897364..898164(-) (pilD) [Klebsiella pneumoniae strain KP13_UID2108280009]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1062113 ACF8JV_RS04230 WP_004145898.1 897364..898164(-) (pilD) [Klebsiella pneumoniae strain KP13_UID2108280009]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425