Detailed information NTG1062108

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8KC_RS24875
• Genome accession: NZ_CP171571
• Coordinates: 5019422..5020222 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP14_UID2108280010
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5014422..5025222

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8KC_RS24840	gspH	5014578..5015093 (+)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-
ACF8KC_RS24845	gspI	5015090..5015455 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8KC_RS24850	gspJ	5015452..5016048 (+)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
ACF8KC_RS24855	gspK	5016045..5017031 (+)	987	WP_077254844.1	type II secretion system minor pseudopilin GspK	-
ACF8KC_RS24860	gspL	5017018..5018211 (+)	1194	WP_032428212.1	type II secretion system protein GspL	-
ACF8KC_RS24865	-	5018204..5018689 (+)	486	WP_004151943.1	type II secretion system protein M	-
ACF8KC_RS24870	-	5018679..5019425 (+)	747	WP_023316460.1	type II secretion system protein N	-
ACF8KC_RS24875	pilD	5019422..5020222 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8KC_RS24880	hrpB	5020270..5022699 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
ACF8KC_RS24885	thpR	5022772..5023308 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8KC_RS24890	sfsA	5023308..5024024 (+)	717	WP_023342992.1	DNA/RNA nuclease SfsA	-
ACF8KC_RS24895	dksA	5024187..5024642 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1062108 ACF8KC_RS24875 WP_004145898.1 5019422..5020222(+) (pilD) [Klebsiella pneumoniae strain KP14_UID2108280010]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1062108 ACF8KC_RS24875 WP_004145898.1 5019422..5020222(+) (pilD) [Klebsiella pneumoniae strain KP14_UID2108280010]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425