Detailed information NTG1062057

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JT_RS14880
• Genome accession: NZ_CP171562
• Coordinates: 3016085..3016885 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP16_UID2108280012
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3011085..3021885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JT_RS14860	dksA	3011665..3012120 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8JT_RS14865	sfsA	3012283..3012999 (-)	717	WP_023342992.1	DNA/RNA nuclease SfsA	-
ACF8JT_RS14870	thpR	3012999..3013535 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JT_RS14875	hrpB	3013608..3016037 (+)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
ACF8JT_RS14880	pilD	3016085..3016885 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8JT_RS14885	-	3016882..3017628 (-)	747	WP_023316460.1	type II secretion system protein N	-
ACF8JT_RS14890	-	3017618..3018103 (-)	486	WP_004151943.1	type II secretion system protein M	-
ACF8JT_RS14895	gspL	3018096..3019289 (-)	1194	WP_032428212.1	type II secretion system protein GspL	-
ACF8JT_RS14900	gspK	3019276..3020262 (-)	987	WP_077254844.1	type II secretion system minor pseudopilin GspK	-
ACF8JT_RS14905	gspJ	3020259..3020855 (-)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
ACF8JT_RS14910	gspI	3020852..3021217 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JT_RS14915	gspH	3021214..3021729 (-)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1062057 ACF8JT_RS14880 WP_004145898.1 3016085..3016885(-) (pilD) [Klebsiella pneumoniae strain KP16_UID2108280012]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1062057 ACF8JT_RS14880 WP_004145898.1 3016085..3016885(-) (pilD) [Klebsiella pneumoniae strain KP16_UID2108280012]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425