Detailed information NTG1061989

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8KE_RS00370
• Genome accession: NZ_CP171553
• Coordinates: 79278..80078 (+)
• Length: 266 a.a.
• NCBI ID: WP_040089576.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP18_UID2108280014
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 74278..85078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8KE_RS00335	gspH	74434..74949 (+)	516	WP_223413302.1	type II secretion system minor pseudopilin GspH	-
ACF8KE_RS00340	gspI	74946..75311 (+)	366	WP_210724956.1	type II secretion system minor pseudopilin GspI	-
ACF8KE_RS00345	gspJ	75308..75904 (+)	597	WP_048975615.1	type II secretion system minor pseudopilin GspJ	-
ACF8KE_RS00350	gspK	75901..76887 (+)	987	WP_223413303.1	type II secretion system minor pseudopilin GspK	-
ACF8KE_RS00355	gspL	76874..78067 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
ACF8KE_RS00360	-	78060..78545 (+)	486	WP_004183037.1	type II secretion system protein M	-
ACF8KE_RS00365	-	78535..79281 (+)	747	WP_040089575.1	type II secretion system protein N	-
ACF8KE_RS00370	pilD	79278..80078 (+)	801	WP_040089576.1	A24 family peptidase	Machinery gene
ACF8KE_RS00375	hrpB	80126..82555 (-)	2430	WP_040089577.1	ATP-dependent helicase HrpB	-
ACF8KE_RS00380	thpR	82628..83164 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8KE_RS00385	sfsA	83164..83880 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8KE_RS00390	dksA	84043..84498 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29354.99 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061989 ACF8KE_RS00370 WP_040089576.1 79278..80078(+) (pilD) [Klebsiella pneumoniae strain KP18_UID2108280014]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061989 ACF8KE_RS00370 WP_040089576.1 79278..80078(+) (pilD) [Klebsiella pneumoniae strain KP18_UID2108280014]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCCTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425