Detailed information NTG1061985

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JR_RS17495
• Genome accession: NZ_CP171550
• Coordinates: 3543170..3543970 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP19_UID2108280015
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3538170..3548970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JR_RS17475	dksA	3538750..3539205 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8JR_RS17480	sfsA	3539368..3540084 (-)	717	WP_023342992.1	DNA/RNA nuclease SfsA	-
ACF8JR_RS17485	thpR	3540084..3540620 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JR_RS17490	hrpB	3540693..3543122 (+)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
ACF8JR_RS17495	pilD	3543170..3543970 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8JR_RS17500	-	3543967..3544713 (-)	747	WP_023316460.1	type II secretion system protein N	-
ACF8JR_RS17505	-	3544703..3545188 (-)	486	WP_004151943.1	type II secretion system protein M	-
ACF8JR_RS17510	gspL	3545181..3546374 (-)	1194	WP_032428212.1	type II secretion system protein GspL	-
ACF8JR_RS17515	gspK	3546361..3547347 (-)	987	WP_077254844.1	type II secretion system minor pseudopilin GspK	-
ACF8JR_RS17520	gspJ	3547344..3547940 (-)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
ACF8JR_RS17525	gspI	3547937..3548302 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JR_RS17530	gspH	3548299..3548814 (-)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061985 ACF8JR_RS17495 WP_004145898.1 3543170..3543970(-) (pilD) [Klebsiella pneumoniae strain KP19_UID2108280015]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061985 ACF8JR_RS17495 WP_004145898.1 3543170..3543970(-) (pilD) [Klebsiella pneumoniae strain KP19_UID2108280015]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425