Detailed information NTG1061957

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8KD_RS10525
• Genome accession: NZ_CP171542
• Coordinates: 2185407..2186207 (-)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain KP20_UID2108280016
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2180407..2191207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8KD_RS10505	dksA	2180987..2181442 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8KD_RS10510	sfsA	2181605..2182321 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8KD_RS10515	thpR	2182321..2182857 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8KD_RS10520	hrpB	2182930..2185359 (+)	2430	WP_040147577.1	ATP-dependent helicase HrpB	-
ACF8KD_RS10525	pilD	2185407..2186207 (-)	801	WP_004191960.1	A24 family peptidase	Machinery gene
ACF8KD_RS10530	-	2186204..2186950 (-)	747	WP_040147578.1	type II secretion system protein N	-
ACF8KD_RS10535	-	2186940..2187425 (-)	486	WP_004151943.1	type II secretion system protein M	-
ACF8KD_RS10540	gspL	2187418..2188611 (-)	1194	WP_040147579.1	type II secretion system protein GspL	-
ACF8KD_RS10545	gspK	2188598..2189584 (-)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
ACF8KD_RS10550	gspJ	2189581..2190177 (-)	597	WP_040147581.1	type II secretion system minor pseudopilin GspJ	-
ACF8KD_RS10555	gspI	2190174..2190539 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8KD_RS10560	gspH	2190536..2191051 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061957 ACF8KD_RS10525 WP_004191960.1 2185407..2186207(-) (pilD) [Klebsiella pneumoniae strain KP20_UID2108280016]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=1061957 ACF8KD_RS10525 WP_004191960.1 2185407..2186207(-) (pilD) [Klebsiella pneumoniae strain KP20_UID2108280016]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421