Detailed information NTG1061920

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JN_RS07910
• Genome accession: NZ_CP171540
• Coordinates: 1603559..1604359 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP21_UID2108280017
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1598559..1609359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JN_RS07875	gspH	1598715..1599230 (+)	516	WP_021313445.1	type II secretion system minor pseudopilin GspH	-
ACF8JN_RS07880	gspI	1599227..1599592 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JN_RS07885	gspJ	1599589..1600185 (+)	597	WP_023342989.1	type II secretion system minor pseudopilin GspJ	-
ACF8JN_RS07890	gspK	1600182..1601168 (+)	987	WP_077254844.1	type II secretion system minor pseudopilin GspK	-
ACF8JN_RS07895	gspL	1601155..1602348 (+)	1194	WP_032428212.1	type II secretion system protein GspL	-
ACF8JN_RS07900	-	1602341..1602826 (+)	486	WP_004151943.1	type II secretion system protein M	-
ACF8JN_RS07905	-	1602816..1603562 (+)	747	WP_023316460.1	type II secretion system protein N	-
ACF8JN_RS07910	pilD	1603559..1604359 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8JN_RS07915	hrpB	1604407..1606836 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
ACF8JN_RS07920	thpR	1606909..1607445 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JN_RS07925	sfsA	1607445..1608161 (+)	717	WP_023342992.1	DNA/RNA nuclease SfsA	-
ACF8JN_RS07930	dksA	1608324..1608779 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061920 ACF8JN_RS07910 WP_004145898.1 1603559..1604359(+) (pilD) [Klebsiella pneumoniae strain KP21_UID2108280017]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061920 ACF8JN_RS07910 WP_004145898.1 1603559..1604359(+) (pilD) [Klebsiella pneumoniae strain KP21_UID2108280017]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425