Detailed information NTG1061908

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JK_RS19230
• Genome accession: NZ_CP171538
• Coordinates: 3893964..3894764 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain KP22_UID2108280018
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3888964..3899764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JK_RS19195	gspH	3889120..3889635 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
ACF8JK_RS19200	gspI	3889632..3889997 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JK_RS19205	gspJ	3889994..3890590 (+)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
ACF8JK_RS19210	gspK	3890587..3891573 (+)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
ACF8JK_RS19215	gspL	3891560..3892753 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
ACF8JK_RS19220	-	3892746..3893231 (+)	486	WP_004145896.1	type II secretion system protein M	-
ACF8JK_RS19225	-	3893221..3893967 (+)	747	WP_004145897.1	type II secretion system protein N	-
ACF8JK_RS19230	pilD	3893964..3894764 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
ACF8JK_RS19235	hrpB	3894812..3897241 (-)	2430	WP_032433845.1	ATP-dependent helicase HrpB	-
ACF8JK_RS19240	thpR	3897314..3897850 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JK_RS19245	sfsA	3897850..3898566 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8JK_RS19250	dksA	3898729..3899184 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061908 ACF8JK_RS19230 WP_004191960.1 3893964..3894764(+) (pilD) [Klebsiella pneumoniae strain KP22_UID2108280018]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=1061908 ACF8JK_RS19230 WP_004191960.1 3893964..3894764(+) (pilD) [Klebsiella pneumoniae strain KP22_UID2108280018]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421