Detailed information NTG1061878

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8KG_RS06730
• Genome accession: NZ_CP171532
• Coordinates: 1417543..1418343 (-)
• Length: 266 a.a.
• NCBI ID: WP_117104140.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP23_UID2108280019
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1412543..1423343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8KG_RS06710	dksA	1413123..1413578 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8KG_RS06715	sfsA	1413741..1414457 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8KG_RS06720	thpR	1414457..1414993 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8KG_RS06725	hrpB	1415066..1417495 (+)	2430	WP_117104141.1	ATP-dependent helicase HrpB	-
ACF8KG_RS06730	pilD	1417543..1418343 (-)	801	WP_117104140.1	A24 family peptidase	Machinery gene
ACF8KG_RS06735	-	1418340..1419086 (-)	747	WP_023282189.1	type II secretion system protein N	-
ACF8KG_RS06740	-	1419076..1419561 (-)	486	WP_064151456.1	type II secretion system protein M	-
ACF8KG_RS06745	gspL	1419554..1420747 (-)	1194	WP_048990300.1	type II secretion system protein GspL	-
ACF8KG_RS06750	gspK	1420734..1421720 (-)	987	WP_117104139.1	type II secretion system minor pseudopilin GspK	-
ACF8KG_RS06755	gspJ	1421717..1422313 (-)	597	WP_048990298.1	type II secretion system minor pseudopilin GspJ	-
ACF8KG_RS06760	gspI	1422310..1422675 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8KG_RS06765	gspH	1422672..1423187 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29453.05 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061878 ACF8KG_RS06730 WP_117104140.1 1417543..1418343(-) (pilD) [Klebsiella pneumoniae strain KP23_UID2108280019]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLFSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061878 ACF8KG_RS06730 WP_117104140.1 1417543..1418343(-) (pilD) [Klebsiella pneumoniae strain KP23_UID2108280019]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGTTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.811	99.624	0.496
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425