Detailed information NTG1061850

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8KB_RS04385
• Genome accession: NZ_CP171525
• Coordinates: 919291..920091 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP25_UID2108280021
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 914291..925091

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8KB_RS04365	dksA	914871..915326 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8KB_RS04370	sfsA	915489..916205 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8KB_RS04375	thpR	916205..916741 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8KB_RS04380	hrpB	916814..919243 (+)	2430	WP_395165696.1	ATP-dependent helicase HrpB	-
ACF8KB_RS04385	pilD	919291..920091 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8KB_RS04390	-	920088..920834 (-)	747	WP_004145897.1	type II secretion system protein N	-
ACF8KB_RS04395	-	920824..921309 (-)	486	WP_004151943.1	type II secretion system protein M	-
ACF8KB_RS04400	gspL	921302..922495 (-)	1194	WP_021441216.1	type II secretion system protein GspL	-
ACF8KB_RS04405	gspK	922482..923468 (-)	987	WP_023279277.1	type II secretion system minor pseudopilin GspK	-
ACF8KB_RS04410	gspJ	923465..924061 (-)	597	WP_023279276.1	type II secretion system minor pseudopilin GspJ	-
ACF8KB_RS04415	gspI	924058..924423 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8KB_RS04420	gspH	924420..924935 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061850 ACF8KB_RS04385 WP_004145898.1 919291..920091(-) (pilD) [Klebsiella pneumoniae strain KP25_UID2108280021]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061850 ACF8KB_RS04385 WP_004145898.1 919291..920091(-) (pilD) [Klebsiella pneumoniae strain KP25_UID2108280021]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425