Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   DK43_RS08940 Genome accession   NZ_CP007573
Coordinates   1851767..1852450 (-) Length   227 a.a.
NCBI ID   WP_003028465.1    Uniprot ID   A0ABD7NBZ0
Organism   Streptococcus anginosus strain SA1     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1846767..1857450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS08915 (DK43_09135) comGA 1847704..1848645 (-) 942 WP_003028470.1 competence type IV pilus ATPase ComGA Machinery gene
  DK43_RS08920 (DK43_09140) - 1848715..1849080 (-) 366 WP_022525291.1 DUF1033 family protein -
  DK43_RS08925 (DK43_09145) glnA 1849265..1850611 (-) 1347 WP_022525292.1 type I glutamate--ammonia ligase -
  DK43_RS08930 (DK43_09150) - 1850650..1851009 (-) 360 WP_003028467.1 MerR family transcriptional regulator -
  DK43_RS08935 (DK43_09155) - 1851086..1851616 (-) 531 WP_003028466.1 aromatic acid exporter family protein -
  DK43_RS08940 (DK43_09160) lytF 1851767..1852450 (-) 684 WP_003028465.1 CHAP domain-containing protein Regulator

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24474.54 Da        Isoelectric Point: 8.9908

>NTDB_id=106183 DK43_RS08940 WP_003028465.1 1851767..1852450(-) (lytF) [Streptococcus anginosus strain SA1]
MKVSQLSKYPHIGKFTVGLSAAVLLLIVSKNTAKADAYTVQYGDSFYDIATKFGMSPYDLAAKNGKIIYDTILPVDTLQV
NGPTATTVSQTNAVAQPTATSAGPSSDTEDVVLNTPTTTGNSYPVGQCAWGVKTLAPWASNWWGNAKDWVANAAYSGFRI
GTTPQVGAIAVWDGGQFGHVAYVTAVANNRAIQVLESNYKGQKQVNNYRGWFDPTIFYGKVTYIYPY

Nucleotide


Download         Length: 684 bp        

>NTDB_id=106183 DK43_RS08940 WP_003028465.1 1851767..1852450(-) (lytF) [Streptococcus anginosus strain SA1]
ATGAAAGTCAGTCAATTATCTAAGTATCCCCATATAGGCAAGTTTACAGTTGGGCTCTCAGCAGCTGTTTTATTGTTGAT
AGTAAGTAAAAACACAGCTAAAGCAGATGCCTATACAGTTCAATATGGTGATTCATTTTATGATATTGCGACAAAATTTG
GAATGAGTCCCTATGATTTAGCGGCAAAAAATGGAAAAATAATTTACGATACTATCCTTCCTGTAGATACGTTACAAGTA
AATGGCCCAACGGCTACTACTGTTAGTCAGACAAATGCAGTAGCACAACCAACTGCTACAAGTGCAGGTCCAAGTTCTGA
TACAGAGGATGTGGTACTAAATACGCCTACAACAACAGGAAACTCTTATCCAGTTGGTCAATGCGCTTGGGGTGTAAAAA
CATTGGCACCTTGGGCTAGTAATTGGTGGGGAAATGCAAAAGATTGGGTTGCCAATGCTGCATACTCAGGCTTTCGTATA
GGAACAACTCCTCAAGTTGGAGCCATTGCTGTTTGGGATGGCGGTCAATTTGGACATGTAGCCTATGTAACAGCTGTGGC
AAATAATCGCGCAATTCAAGTGCTGGAGTCAAATTACAAAGGTCAAAAACAAGTTAACAATTACCGTGGTTGGTTTGACC
CTACAATATTTTATGGAAAGGTAACTTATATTTACCCTTATTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(38-80)

CHAP domain (CHAP)

(120-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD7NBZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

47.753

78.414

0.374
  lytF Streptococcus gordonii str. Challis substr. CH1

47.191

78.414

0.37

Multiple sequence alignment