Detailed information NTG1061806

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JO_RS15015
• Genome accession: NZ_CP171521
• Coordinates: 3049084..3049884 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP27_UID2108280023
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3044084..3054884

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JO_RS14980	gspH	3044237..3044752 (+)	516	WP_085206131.1	type II secretion system minor pseudopilin GspH	-
ACF8JO_RS14985	gspI	3044749..3045114 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JO_RS14990	gspJ	3045111..3045707 (+)	597	WP_025714377.1	type II secretion system minor pseudopilin GspJ	-
ACF8JO_RS14995	gspK	3045704..3046684 (+)	981	WP_085206133.1	type II secretion system minor pseudopilin GspK	-
ACF8JO_RS15000	gspL	3046677..3047873 (+)	1197	WP_085206135.1	type II secretion system protein GspL	-
ACF8JO_RS15005	-	3047866..3048351 (+)	486	WP_085206137.1	type II secretion system protein M	-
ACF8JO_RS15010	-	3048341..3049087 (+)	747	WP_009309263.1	type II secretion system protein N	-
ACF8JO_RS15015	pilD	3049084..3049884 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8JO_RS15020	hrpB	3049932..3052361 (-)	2430	WP_085206139.1	ATP-dependent helicase HrpB	-
ACF8JO_RS15025	thpR	3052434..3052970 (+)	537	WP_085206141.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JO_RS15030	sfsA	3052970..3053686 (+)	717	WP_025714101.1	DNA/RNA nuclease SfsA	-
ACF8JO_RS15035	dksA	3053849..3054304 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061806 ACF8JO_RS15015 WP_004145898.1 3049084..3049884(+) (pilD) [Klebsiella pneumoniae strain KP27_UID2108280023]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061806 ACF8JO_RS15015 WP_004145898.1 3049084..3049884(+) (pilD) [Klebsiella pneumoniae strain KP27_UID2108280023]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425