Detailed information NTG1061791

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8J5_RS10765
• Genome accession: NZ_CP171517
• Coordinates: 2230703..2231503 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP28_UID2108280024
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2225703..2236503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8J5_RS10745	dksA	2226283..2226738 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8J5_RS10750	sfsA	2226901..2227617 (-)	717	WP_020324420.1	DNA/RNA nuclease SfsA	-
ACF8J5_RS10755	thpR	2227617..2228153 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8J5_RS10760	hrpB	2228226..2230655 (+)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
ACF8J5_RS10765	pilD	2230703..2231503 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8J5_RS10770	-	2231500..2232246 (-)	747	WP_004178605.1	type II secretion system protein N	-
ACF8J5_RS10775	-	2232236..2232721 (-)	486	WP_004145896.1	type II secretion system protein M	-
ACF8J5_RS10780	gspL	2232714..2233907 (-)	1194	WP_004194919.1	type II secretion system protein GspL	-
ACF8J5_RS10785	gspK	2233894..2234880 (-)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
ACF8J5_RS10790	gspJ	2234877..2235473 (-)	597	WP_004178612.1	type II secretion system minor pseudopilin GspJ	-
ACF8J5_RS10795	gspI	2235470..2235835 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8J5_RS10800	gspH	2235832..2236347 (-)	516	WP_004194939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061791 ACF8J5_RS10765 WP_004145898.1 2230703..2231503(-) (pilD) [Klebsiella pneumoniae strain KP28_UID2108280024]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061791 ACF8J5_RS10765 WP_004145898.1 2230703..2231503(-) (pilD) [Klebsiella pneumoniae strain KP28_UID2108280024]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCATGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425