Detailed information NTG1061737

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JY_RS15795
• Genome accession: NZ_CP171510
• Coordinates: 3183022..3183822 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP30_UID2108280026
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3178022..3188822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JY_RS15760	gspH	3178178..3178693 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
ACF8JY_RS15765	gspI	3178690..3179055 (+)	366	WP_048993360.1	type II secretion system minor pseudopilin GspI	-
ACF8JY_RS15770	gspJ	3179052..3179648 (+)	597	WP_064152192.1	type II secretion system minor pseudopilin GspJ	-
ACF8JY_RS15775	gspK	3179645..3180631 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
ACF8JY_RS15780	gspL	3180618..3181811 (+)	1194	WP_025985182.1	type II secretion system protein GspL	-
ACF8JY_RS15785	-	3181804..3182289 (+)	486	WP_025368434.1	type II secretion system protein M	-
ACF8JY_RS15790	-	3182279..3183025 (+)	747	WP_064152193.1	type II secretion system protein N	-
ACF8JY_RS15795	pilD	3183022..3183822 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8JY_RS15800	hrpB	3183870..3186299 (-)	2430	WP_004222692.1	ATP-dependent helicase HrpB	-
ACF8JY_RS15805	thpR	3186372..3186908 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JY_RS15810	sfsA	3186908..3187624 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8JY_RS15815	dksA	3187787..3188242 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061737 ACF8JY_RS15795 WP_004145898.1 3183022..3183822(+) (pilD) [Klebsiella pneumoniae strain KP30_UID2108280026]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061737 ACF8JY_RS15795 WP_004145898.1 3183022..3183822(+) (pilD) [Klebsiella pneumoniae strain KP30_UID2108280026]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425