Detailed information NTG1061713

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JS_RS15115
• Genome accession: NZ_CP171508
• Coordinates: 3132410..3133210 (+)
• Length: 266 a.a.
• NCBI ID: WP_004213441.1
• Uniprot ID: A0A9Q4U0T4
• Organism: Klebsiella pneumoniae strain KP31_UID2108280027
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3127410..3138210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JS_RS15080	gspH	3127566..3128081 (+)	516	WP_032414529.1	type II secretion system minor pseudopilin GspH	-
ACF8JS_RS15085	gspI	3128078..3128443 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JS_RS15090	gspJ	3128440..3129036 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
ACF8JS_RS15095	gspK	3129033..3130019 (+)	987	WP_077254116.1	type II secretion system minor pseudopilin GspK	-
ACF8JS_RS15100	gspL	3130006..3131199 (+)	1194	WP_032434208.1	type II secretion system protein GspL	-
ACF8JS_RS15105	-	3131192..3131677 (+)	486	WP_004145896.1	type II secretion system protein M	-
ACF8JS_RS15110	-	3131667..3132413 (+)	747	WP_032434210.1	type II secretion system protein N	-
ACF8JS_RS15115	pilD	3132410..3133210 (+)	801	WP_004213441.1	A24 family peptidase	Machinery gene
ACF8JS_RS15120	hrpB	3133258..3135687 (-)	2430	WP_032434212.1	ATP-dependent helicase HrpB	-
ACF8JS_RS15125	thpR	3135760..3136296 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JS_RS15130	sfsA	3136296..3137012 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8JS_RS15135	dksA	3137175..3137630 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29405.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061713 ACF8JS_RS15115 WP_004213441.1 3132410..3133210(+) (pilD) [Klebsiella pneumoniae strain KP31_UID2108280027]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061713 ACF8JS_RS15115 WP_004213441.1 3132410..3133210(+) (pilD) [Klebsiella pneumoniae strain KP31_UID2108280027]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425