Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   DK43_RS08410 Genome accession   NZ_CP007573
Coordinates   1748324..1749370 (-) Length   348 a.a.
NCBI ID   WP_004224306.1    Uniprot ID   A0ABD7NCW2
Organism   Streptococcus anginosus strain SA1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1743324..1754370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS08385 (DK43_08595) nusA 1743431..1744624 (-) 1194 WP_003078357.1 transcription termination factor NusA -
  DK43_RS08390 (DK43_08600) rimP 1744678..1745166 (-) 489 WP_004224293.1 ribosome maturation factor RimP -
  DK43_RS08395 (DK43_08605) - 1745414..1746103 (-) 690 WP_037582627.1 VIT family protein -
  DK43_RS08400 (DK43_08610) trmB 1746844..1747479 (-) 636 WP_041331904.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DK43_RS08405 (DK43_08615) - 1747476..1748273 (-) 798 WP_004224303.1 phosphotransferase family protein -
  DK43_RS08410 (DK43_08620) pptB 1748324..1749370 (-) 1047 WP_004224306.1 ABC transporter permease Regulator
  DK43_RS08415 (DK43_08625) pptA 1749367..1750098 (-) 732 WP_004224310.1 ABC transporter ATP-binding protein Regulator
  DK43_RS08420 (DK43_08630) - 1750167..1750577 (+) 411 WP_004224313.1 HIT family protein -
  DK43_RS08425 (DK43_08635) - 1750587..1750874 (+) 288 WP_004224316.1 hypothetical protein -
  DK43_RS08430 (DK43_08640) - 1750921..1752036 (-) 1116 WP_004224318.1 LCP family protein -
  DK43_RS08435 (DK43_08645) - 1752043..1752564 (-) 522 WP_004224322.1 GNAT family N-acetyltransferase -
  DK43_RS08440 (DK43_08650) tsaE 1752557..1752997 (-) 441 WP_003033807.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40737.92 Da        Isoelectric Point: 10.3231

>NTDB_id=106166 DK43_RS08410 WP_004224306.1 1748324..1749370(-) (pptB) [Streptococcus anginosus strain SA1]
MRELFQKRKQVFRNQCLKYSRYVFNDHFVLFLLVFTGFLAVQYSQLLRNLPSNHLPIILALAVLLILLLPLGRIATYMEK
PDSLFLLVKEEELNSYLQEQMRSSYRLWALLQTAILLLAAPLFLALGLPFLGWLILVFLMLLAKWFVFLQKSQKFYQGAG
VNWSYLIAYEERRKQTILRFFALFTNVKGISNSVKRRAYLDGLTNILPKRQSTTWQNMYLRSYLRNGDFLALTIRLLFLS
LLGIGFISQSWIAAIFVALLNYLLLFQLTALYHAFDYQYLTFLFPLEINSKLKGVKQVIVLIGYSVLFVETMMALLFFQD
RVALLFMIGITLLLYVIYLPFKLRSLVD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=106166 DK43_RS08410 WP_004224306.1 1748324..1749370(-) (pptB) [Streptococcus anginosus strain SA1]
ATGAGAGAACTGTTTCAAAAGCGCAAACAAGTATTTCGCAATCAATGTTTGAAGTATTCGCGCTATGTTTTTAACGACCA
TTTTGTCCTCTTTTTATTAGTTTTTACTGGCTTTTTAGCGGTTCAATACAGTCAGTTGTTGCGAAATTTACCTTCAAATC
ACCTGCCAATCATTCTTGCTTTAGCAGTTCTTTTGATTTTATTGTTGCCTCTGGGACGAATCGCGACATATATGGAAAAA
CCAGATAGTCTATTTTTATTGGTCAAAGAAGAGGAACTAAACAGCTACTTACAAGAACAAATGCGTTCATCTTATCGATT
ATGGGCCTTGCTTCAAACGGCTATTCTATTGCTAGCTGCGCCACTTTTTCTTGCTTTAGGTCTGCCATTTTTGGGATGGC
TTATTCTTGTATTTCTTATGTTGCTAGCAAAATGGTTCGTATTTTTGCAGAAAAGTCAAAAATTTTACCAAGGTGCAGGG
GTGAATTGGAGCTATCTCATTGCTTACGAAGAAAGACGAAAACAGACAATCCTGCGTTTCTTTGCTCTCTTTACCAATGT
TAAGGGAATTTCCAATAGCGTAAAACGCCGAGCATATCTTGATGGTTTGACGAATATTCTACCAAAAAGACAGTCAACTA
CTTGGCAAAATATGTATTTGCGTTCTTATTTGCGCAATGGTGATTTTCTTGCCTTGACTATACGGTTGCTGTTTCTGTCT
CTTTTGGGAATTGGTTTTATCAGTCAATCGTGGATTGCTGCCATATTTGTGGCATTGTTAAATTATCTCCTGCTATTTCA
GTTGACAGCCTTGTACCATGCCTTTGATTACCAATATTTGACGTTCTTATTCCCTTTAGAAATCAACTCAAAGTTAAAAG
GAGTGAAACAAGTGATTGTTCTTATTGGCTACAGCGTGCTTTTTGTGGAAACAATGATGGCTTTGCTGTTTTTCCAAGAT
AGAGTAGCTTTGCTTTTTATGATAGGAATCACATTGCTACTCTATGTCATTTATTTACCATTCAAATTAAGAAGTTTGGT
TGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0ABD7NCW2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.414

100

0.474

  pptB Streptococcus salivarius strain HSISS4

46.552

100

0.466