Detailed information NTG1061620

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8J6_RS14750
• Genome accession: NZ_CP171497
• Coordinates: 3048369..3049169 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP37_UID2108280033
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3043369..3054169

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8J6_RS14715	gspH	3043525..3044040 (+)	516	WP_301692257.1	type II secretion system minor pseudopilin GspH	-
ACF8J6_RS14720	gspI	3044037..3044402 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8J6_RS14725	gspJ	3044399..3044995 (+)	597	WP_070984590.1	type II secretion system minor pseudopilin GspJ	-
ACF8J6_RS14730	gspK	3044992..3045978 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
ACF8J6_RS14735	gspL	3045965..3047158 (+)	1194	WP_048265188.1	type II secretion system protein GspL	-
ACF8J6_RS14740	-	3047151..3047636 (+)	486	WP_004145896.1	type II secretion system protein M	-
ACF8J6_RS14745	-	3047626..3048372 (+)	747	WP_065888578.1	type II secretion system protein N	-
ACF8J6_RS14750	pilD	3048369..3049169 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8J6_RS14755	hrpB	3049217..3051646 (-)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
ACF8J6_RS14760	thpR	3051719..3052255 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8J6_RS14765	sfsA	3052255..3052971 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8J6_RS14770	dksA	3053134..3053589 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061620 ACF8J6_RS14750 WP_004145898.1 3048369..3049169(+) (pilD) [Klebsiella pneumoniae strain KP37_UID2108280033]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061620 ACF8J6_RS14750 WP_004145898.1 3048369..3049169(+) (pilD) [Klebsiella pneumoniae strain KP37_UID2108280033]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAACTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425