Detailed information NTG1061575

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JW_RS06670
• Genome accession: NZ_CP171492
• Coordinates: 1401887..1402687 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP39_UID2108280035
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1396887..1407687

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JW_RS06650	dksA	1397467..1397922 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8JW_RS06655	sfsA	1398085..1398801 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8JW_RS06660	thpR	1398801..1399337 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JW_RS06665	hrpB	1399410..1401839 (+)	2430	WP_012737409.1	ATP-dependent helicase HrpB	-
ACF8JW_RS06670	pilD	1401887..1402687 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8JW_RS06675	-	1402684..1403430 (-)	747	WP_012737410.1	type II secretion system protein N	-
ACF8JW_RS06680	-	1403420..1403905 (-)	486	WP_012737411.1	type II secretion system protein M	-
ACF8JW_RS06685	gspL	1403898..1405091 (-)	1194	WP_012737412.1	type II secretion system protein GspL	-
ACF8JW_RS06690	gspK	1405078..1406064 (-)	987	WP_077250502.1	type II secretion system minor pseudopilin GspK	-
ACF8JW_RS06695	gspJ	1406061..1406657 (-)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
ACF8JW_RS06700	gspI	1406654..1407019 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JW_RS06705	gspH	1407016..1407531 (-)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061575 ACF8JW_RS06670 WP_004145898.1 1401887..1402687(-) (pilD) [Klebsiella pneumoniae strain KP39_UID2108280035]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061575 ACF8JW_RS06670 WP_004145898.1 1401887..1402687(-) (pilD) [Klebsiella pneumoniae strain KP39_UID2108280035]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425