Detailed information NTG1061523

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8JQ_RS03895
• Genome accession: NZ_CP171488
• Coordinates: 816808..817608 (-)
• Length: 266 a.a.
• NCBI ID: WP_040152509.1
• Uniprot ID: A0AAE3RIR6
• Organism: Klebsiella pneumoniae strain KP41_UID2108280037
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 811808..822608

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8JQ_RS03875	dksA	812388..812843 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8JQ_RS03880	sfsA	813006..813722 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8JQ_RS03885	thpR	813722..814258 (-)	537	WP_040152504.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8JQ_RS03890	hrpB	814331..816760 (+)	2430	WP_040152506.1	ATP-dependent helicase HrpB	-
ACF8JQ_RS03895	pilD	816808..817608 (-)	801	WP_040152509.1	A24 family peptidase	Machinery gene
ACF8JQ_RS03900	-	817605..818351 (-)	747	WP_023316460.1	type II secretion system protein N	-
ACF8JQ_RS03905	-	818341..818826 (-)	486	WP_004151943.1	type II secretion system protein M	-
ACF8JQ_RS03910	gspL	818819..820012 (-)	1194	WP_004191957.1	type II secretion system protein GspL	-
ACF8JQ_RS03915	gspK	819999..820985 (-)	987	WP_004213439.1	type II secretion system minor pseudopilin GspK	-
ACF8JQ_RS03920	gspJ	820982..821578 (-)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
ACF8JQ_RS03925	gspI	821575..821940 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8JQ_RS03930	gspH	821937..822452 (-)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29402.05 Da
• Isoelectric Point: 9.1728

>NTDB_id=1061523 ACF8JQ_RS03895 WP_040152509.1 816808..817608(-) (pilD) [Klebsiella pneumoniae strain KP41_UID2108280037]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPNAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=1061523 ACF8JQ_RS03895 WP_040152509.1 816808..817608(-) (pilD) [Klebsiella pneumoniae strain KP41_UID2108280037]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGAATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.679	99.624	0.485
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421