Detailed information NTG1061512

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8KJ_RS10750
• Genome accession: NZ_CP171486
• Coordinates: 2230937..2231737 (-)
• Length: 266 a.a.
• NCBI ID: WP_049116597.1
• Uniprot ID: -
• Organism: Klebsiella quasipneumoniae strain KQ42_UID2108280038
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2225937..2236737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8KJ_RS10730	dksA	2226517..2226972 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8KJ_RS10735	sfsA	2227135..2227851 (-)	717	WP_004204404.1	DNA/RNA nuclease SfsA	-
ACF8KJ_RS10740	thpR	2227851..2228387 (-)	537	WP_004204405.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8KJ_RS10745	hrpB	2228460..2230889 (+)	2430	WP_032455567.1	ATP-dependent helicase HrpB	-
ACF8KJ_RS10750	pilD	2230937..2231737 (-)	801	WP_049116597.1	A24 family peptidase	Machinery gene
ACF8KJ_RS10755	-	2231752..2232480 (-)	729	WP_064178512.1	type II secretion system protein N	-
ACF8KJ_RS10760	-	2232470..2232955 (-)	486	WP_043521988.1	type II secretion system protein M	-
ACF8KJ_RS10765	gspL	2232948..2234144 (-)	1197	WP_064178511.1	type II secretion system protein GspL	-
ACF8KJ_RS10770	gspK	2234137..2235117 (-)	981	WP_004204412.1	type II secretion system minor pseudopilin GspK	-
ACF8KJ_RS10775	gspJ	2235114..2235710 (-)	597	WP_032426022.1	type II secretion system minor pseudopilin GspJ	-
ACF8KJ_RS10780	gspI	2235707..2236072 (-)	366	WP_100098543.1	type II secretion system minor pseudopilin GspI	-
ACF8KJ_RS10785	gspH	2236069..2236584 (-)	516	WP_004204416.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29368.95 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061512 ACF8KJ_RS10750 WP_049116597.1 2230937..2231737(-) (pilD) [Klebsiella quasipneumoniae strain KQ42_UID2108280038]
MTTLAALSLHFPLVWYGFLLLFGLALGSFYNVVIYRLPRMLAQTADDEPLTLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQARISWSYPLTELTTGLLFILAGALLAPGLALAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQALPQVLLFASASGLMWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGVFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061512 ACF8KJ_RS10750 WP_049116597.1 2230937..2231737(-) (pilD) [Klebsiella quasipneumoniae strain KQ42_UID2108280038]
ATGACGACATTAGCCGCATTATCGCTGCATTTCCCCCTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAACGTGGTGATCTACCGTCTGCCGCGCATGCTGGCCCAGACCGCGGACGACGAGCCGCTAACCCTCAGCA
CGCCGGGCTCATCCTGTCCGCAGTGTCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGCTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCGCATCTCGTGGAGCTATCCGCTGACCGAGCTGACCACCGGCCTGCTGTTTAT
CCTCGCCGGGGCGCTGCTCGCGCCGGGACTGGCGCTGGCGGGCGGCCTGGTGCTGCTCTCCTTTCTGCTGATACTGGCGC
GGATTGATGCCCGGACCCAGCTGCTGCCCGATCGCCTGACCCTGCCCCTGCTGTGGGCCGGACTGCTGTTTAATCTTAAC
GAGGTGTACATTGCGCTGCCGGACGCGGTCGCCGGGGCGATGGCTGGTTATCTGGCACTGTGGTCGGTCTATTGGCTGTT
CCGCCTGCTGACCGGCAAAGAGGCTCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGCTCTGCCGCAGGTGCTGTTGTTCGCCTCGGCCAGCGGGCTGATGTGGACCCTGCTGCAGCGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGAGGGGGCGTTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425