Detailed information NTG1061488

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF8J9_RS10675
• Genome accession: NZ_CP171484
• Coordinates: 2207286..2208086 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain KP43_UID2108280039
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2202286..2213086

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF8J9_RS10655	dksA	2202866..2203321 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF8J9_RS10660	sfsA	2203484..2204200 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF8J9_RS10665	thpR	2204200..2204736 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF8J9_RS10670	hrpB	2204809..2207238 (+)	2430	WP_012737409.1	ATP-dependent helicase HrpB	-
ACF8J9_RS10675	pilD	2207286..2208086 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
ACF8J9_RS10680	-	2208083..2208829 (-)	747	WP_012737410.1	type II secretion system protein N	-
ACF8J9_RS10685	-	2208819..2209304 (-)	486	WP_012737411.1	type II secretion system protein M	-
ACF8J9_RS10690	gspL	2209297..2210490 (-)	1194	WP_012737412.1	type II secretion system protein GspL	-
ACF8J9_RS10695	gspK	2210477..2211463 (-)	987	WP_077250502.1	type II secretion system minor pseudopilin GspK	-
ACF8J9_RS10700	gspJ	2211460..2212056 (-)	597	WP_012737414.1	type II secretion system minor pseudopilin GspJ	-
ACF8J9_RS10705	gspI	2212053..2212418 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF8J9_RS10710	gspH	2212415..2212930 (-)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=1061488 ACF8J9_RS10675 WP_004145898.1 2207286..2208086(-) (pilD) [Klebsiella pneumoniae strain KP43_UID2108280039]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1061488 ACF8J9_RS10675 WP_004145898.1 2207286..2208086(-) (pilD) [Klebsiella pneumoniae strain KP43_UID2108280039]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425