Detailed information NTG1061410

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACGB44_RS20235
• Genome accession: NZ_CP171478
• Coordinates: 4318238..4319518 (-)
• Length: 426 a.a.
• NCBI ID: WP_394375111.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain RL-XB02
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4313238..4324518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGB44_RS20220 (ACGB44_20220)	rpoH	4315588..4316442 (-)	855	WP_003297176.1	RNA polymerase sigma factor RpoH	-
ACGB44_RS20225 (ACGB44_20225)	ftsX	4316554..4317573 (-)	1020	WP_394375110.1	permease-like cell division protein FtsX	-
ACGB44_RS20230 (ACGB44_20230)	ftsE	4317570..4318241 (-)	672	WP_045665759.1	cell division ATP-binding protein FtsE	-
ACGB44_RS20235 (ACGB44_20235)	pilA	4318238..4319518 (-)	1281	WP_394375111.1	signal recognition particle-docking protein FtsY	Machinery gene
ACGB44_RS20240 (ACGB44_20240)	-	4319747..4321099 (+)	1353	WP_156244978.1	pitrilysin family protein	-
ACGB44_RS20245 (ACGB44_20245)	-	4321092..4322624 (+)	1533	WP_394375112.1	M16 family metallopeptidase	-
ACGB44_RS20250 (ACGB44_20250)	rsmD	4322624..4323226 (+)	603	WP_045632982.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ACGB44_RS20255 (ACGB44_20255)	-	4323238..4323642 (-)	405	WP_013984344.1	hypothetical protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 45546.88 Da
• Isoelectric Point: 4.5894

>NTDB_id=1061410 ACGB44_RS20235 WP_394375111.1 4318238..4319518(-) (pilA) [Stutzerimonas frequens strain RL-XB02]
MFGSNDDKKTPAEPGEKKGLFGWLRKKPQPAPAEQPAAEQPDSESVEQTGAPVESPVATPQEEQPARMVEADMQPAEDIE
PVLLHPEPEPEPEPEPEPEPEPLPAPVVATAPEAPTKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETR
LLTADVGVEATTAIMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIDAGKRPYVILVVGVNGVGKTTTIGKL
AKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVVAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNL
MEELKKVRRVMGKLDESAPHEVLLVLDAGTGQNAINQTKQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGV
GESIDDLRTFEADAFVKALFSQREDA

Nucleotide

• Length: 1281 bp

>NTDB_id=1061410 ACGB44_RS20235 WP_394375111.1 4318238..4319518(-) (pilA) [Stutzerimonas frequens strain RL-XB02]
ATGTTTGGTTCCAACGACGACAAGAAGACGCCGGCCGAGCCCGGTGAAAAGAAAGGCCTGTTCGGCTGGCTGCGCAAGAA
ACCGCAGCCCGCGCCGGCAGAGCAGCCCGCCGCCGAACAGCCGGACAGCGAATCGGTCGAGCAGACCGGGGCGCCTGTCG
AATCGCCTGTCGCGACACCTCAGGAAGAGCAACCGGCGCGCATGGTCGAGGCCGATATGCAGCCGGCTGAGGACATAGAG
CCGGTGCTGCTGCACCCTGAGCCCGAACCCGAACCCGAACCCGAACCCGAACCCGAACCGGAGCCGTTACCTGCCCCGGT
CGTAGCGACCGCGCCGGAGGCCCCAACCAAGCTCGGCTTCTTCGCTCGCCTGCGCCAGGGGCTGTCGAAAACCAGCGCCA
GCATTGGCGAAGGTATGGCCAGCCTGTTCCTCGGCAAGAAGGCCATCGACGACGATCTGCTCGACGAGCTGGAAACCCGC
CTGCTGACCGCCGACGTCGGCGTCGAGGCGACCACCGCGATCATGCAGAATCTCACCCGGCGCGTCTCGCGCAAGGAGCT
GGCCGACAGCGGCGCGCTCTACACCGCGCTGCAGGAAGAACTCGTTGGCCTGCTCAAGCCGGTCGAGCAGCCGCTGGCGA
TCGATGCTGGCAAGCGCCCGTATGTGATCCTGGTGGTCGGCGTGAACGGCGTCGGTAAGACCACCACCATCGGCAAGCTG
GCCAAGAAGCTGCAGCTCGACGGCAAGAAGGTCATGCTCGCCGCCGGCGACACATTCCGCGCCGCGGCGGTGGAGCAGCT
GCAGGTCTGGGGCGAGCGCAACGGCATTCCGGTGGTCGCCCAGCACACCGGTGCCGATTCCGCCTCGGTGATCTTCGATG
CGGTGCAGGCCGCCAAGGCGCGCGGCATCGACGTGCTGATCGCCGACACCGCGGGCCGTCTGCATACCAAGGACAACCTG
ATGGAAGAGCTGAAGAAAGTCCGTCGGGTGATGGGCAAGCTCGACGAGTCGGCTCCCCACGAAGTCCTGCTGGTACTCGA
CGCCGGCACTGGCCAGAACGCCATCAACCAGACCAAGCAGTTCAACCAGGCGGTCGAGCTGACCGGGCTGGCACTGACCA
AGCTCGACGGCACCGCCAAGGGCGGCGTGATCTTCGCGCTGGCCAAGCAGTTCGGCACGCCGATCCGCTACATCGGCGTG
GGTGAAAGCATCGACGATCTGCGCACCTTCGAGGCCGATGCCTTCGTCAAGGCGCTGTTCTCCCAGCGGGAAGACGCATG
A

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (221-420)

• SRP54-type protein, helical bundle domain (SRP54_N) (136-201)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.826	100	0.488