Detailed information NTG1061153

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACGTGP_RS10245
• Genome accession: NZ_CP171398
• Coordinates: 2215201..2216061 (+)
• Length: 286 a.a.
• NCBI ID: WP_001152278.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain T24
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2210201..2221061

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGTGP_RS10225 (ACGTGP_10225)	secG	2210806..2211135 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
ACGTGP_RS10230 (ACGTGP_10230)	tpiA	2211148..2211942 (-)	795	WP_218666614.1	triose-phosphate isomerase	-
ACGTGP_RS10235 (ACGTGP_10235)	pilB	2212233..2213945 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACGTGP_RS10240 (ACGTGP_10240)	pilC	2213975..2215201 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
ACGTGP_RS10245 (ACGTGP_10245)	pilD	2215201..2216061 (+)	861	WP_001152278.1	A24 family peptidase	Machinery gene
ACGTGP_RS10250 (ACGTGP_10250)	coaE	2216063..2216659 (+)	597	WP_266125542.1	dephospho-CoA kinase	-
ACGTGP_RS10255 (ACGTGP_10255)	-	2216656..2217570 (-)	915	WP_000075012.1	DMT family transporter	-
ACGTGP_RS10260 (ACGTGP_10260)	rlmB	2217606..2218355 (-)	750	WP_269527498.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACGTGP_RS10265 (ACGTGP_10265)	-	2218457..2218783 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
ACGTGP_RS10270 (ACGTGP_10270)	-	2218860..2220170 (-)	1311	WP_024438383.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32056.47 Da
• Isoelectric Point: 7.1041

>NTDB_id=1061153 ACGTGP_RS10245 WP_001152278.1 2215201..2216061(+) (pilD) [Acinetobacter baumannii strain T24]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1061153 ACGTGP_RS10245 WP_001152278.1 2215201..2216061(+) (pilD) [Acinetobacter baumannii strain T24]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.301	100	0.993
pilD	Acinetobacter nosocomialis M2	98.951	100	0.99
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441