Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   ACGTGP_RS01365 Genome accession   NZ_CP171398
Coordinates   297596..297976 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain T24     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 292596..302976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS01335 (ACGTGP_01335) tadA 292715..293218 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  ACGTGP_RS01340 (ACGTGP_01340) - 293225..294349 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  ACGTGP_RS01345 (ACGTGP_01345) ung 294346..295059 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  ACGTGP_RS01350 (ACGTGP_01350) - 295110..295706 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  ACGTGP_RS01355 (ACGTGP_01355) gspK 295936..296895 (-) 960 WP_272264566.1 type II secretion system minor pseudopilin GspK -
  ACGTGP_RS01360 (ACGTGP_01360) xcpW 296895..297596 (-) 702 WP_272264565.1 type II secretion system minor pseudopilin GspJ Machinery gene
  ACGTGP_RS01365 (ACGTGP_01365) xcpV 297596..297976 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  ACGTGP_RS01370 (ACGTGP_01370) - 297966..298520 (-) 555 WP_000841373.1 type II secretion system protein -
  ACGTGP_RS01375 (ACGTGP_01375) - 298530..299138 (-) 609 WP_272264613.1 TetR/AcrR family transcriptional regulator -
  ACGTGP_RS01380 (ACGTGP_01380) - 299176..299949 (-) 774 WP_000497298.1 TatD family hydrolase -
  ACGTGP_RS01385 (ACGTGP_01385) - 299967..300308 (-) 342 WP_001183025.1 PilZ domain-containing protein -
  ACGTGP_RS01390 (ACGTGP_01390) - 300320..301300 (-) 981 WP_001075420.1 DNA polymerase III subunit delta' -
  ACGTGP_RS01395 (ACGTGP_01395) kdsB 301312..302073 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=1061124 ACGTGP_RS01365 WP_000836911.1 297596..297976(-) (xcpV) [Acinetobacter baumannii strain T24]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1061124 ACGTGP_RS01365 WP_000836911.1 297596..297976(-) (xcpV) [Acinetobacter baumannii strain T24]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGGACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment