Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACGTHP_RS08580 Genome accession   NZ_CP171396
Coordinates   1855657..1856397 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain T14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1850657..1861397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTHP_RS08565 (ACGTHP_08565) ponA 1851244..1853799 (-) 2556 WP_394556498.1 penicillin-binding protein PBP1a -
  ACGTHP_RS08570 (ACGTHP_08570) pilM 1853961..1855019 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACGTHP_RS08575 (ACGTHP_08575) pilN 1855019..1855660 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ACGTHP_RS08580 (ACGTHP_08580) pilO 1855657..1856397 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACGTHP_RS08585 (ACGTHP_08585) pilP 1856408..1856935 (+) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  ACGTHP_RS08590 (ACGTHP_08590) pilQ 1856998..1859163 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ACGTHP_RS08595 (ACGTHP_08595) aroK 1859175..1859744 (+) 570 WP_000643712.1 shikimate kinase AroK -
  ACGTHP_RS08600 (ACGTHP_08600) aroB 1859773..1860855 (+) 1083 WP_272343339.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=1061085 ACGTHP_RS08580 WP_000076101.1 1855657..1856397(+) (pilO) [Acinetobacter baumannii strain T14]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1061085 ACGTHP_RS08580 WP_000076101.1 1855657..1856397(+) (pilO) [Acinetobacter baumannii strain T14]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTCGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment