Detailed information NTG1060988

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACF1XW_RS07525
• Genome accession: NZ_CP171385
• Coordinates: 1577111..1577911 (-)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain KH62-R2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1572111..1582911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF1XW_RS07505 (ACF1XW_07505)	dksA	1572691..1573146 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
ACF1XW_RS07510 (ACF1XW_07510)	sfsA	1573309..1574025 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACF1XW_RS07515 (ACF1XW_07515)	thpR	1574025..1574561 (-)	537	WP_004894180.1	RNA 2',3'-cyclic phosphodiesterase	-
ACF1XW_RS07520 (ACF1XW_07520)	hrpB	1574634..1577063 (+)	2430	WP_031588872.1	ATP-dependent helicase HrpB	-
ACF1XW_RS07525 (ACF1XW_07525)	pilD	1577111..1577911 (-)	801	WP_004191960.1	A24 family peptidase	Machinery gene
ACF1XW_RS07530 (ACF1XW_07530)	-	1577908..1578654 (-)	747	WP_004145897.1	type II secretion system protein N	-
ACF1XW_RS07535 (ACF1XW_07535)	-	1578644..1579129 (-)	486	WP_004145896.1	type II secretion system protein M	-
ACF1XW_RS07540 (ACF1XW_07540)	gspL	1579122..1580315 (-)	1194	WP_019704440.1	type II secretion system protein GspL	-
ACF1XW_RS07545 (ACF1XW_07545)	gspK	1580302..1581288 (-)	987	WP_309354437.1	type II secretion system minor pseudopilin GspK	-
ACF1XW_RS07550 (ACF1XW_07550)	gspJ	1581285..1581881 (-)	597	WP_019705881.1	type II secretion system minor pseudopilin GspJ	-
ACF1XW_RS07555 (ACF1XW_07555)	gspI	1581878..1582243 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACF1XW_RS07560 (ACF1XW_07560)	gspH	1582240..1582755 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1060988 ACF1XW_RS07525 WP_004191960.1 1577111..1577911(-) (pilD) [Klebsiella pneumoniae strain KH62-R2]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=1060988 ACF1XW_RS07525 WP_004191960.1 1577111..1577911(-) (pilD) [Klebsiella pneumoniae strain KH62-R2]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGTGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACTCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421