Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DK43_RS00180 Genome accession   NZ_CP007573
Coordinates   37356..38453 (-) Length   365 a.a.
NCBI ID   WP_003027889.1    Uniprot ID   A0ABD7NID5
Organism   Streptococcus anginosus strain SA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32356..43453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS00160 (DK43_00165) - 32844..33533 (+) 690 WP_003027894.1 triose-phosphate isomerase -
  DK43_RS00165 (DK43_00170) galE 33554..34549 (+) 996 WP_003027892.1 UDP-glucose 4-epimerase GalE -
  DK43_RS00170 (DK43_00175) trpS 34631..35656 (+) 1026 WP_003027891.1 tryptophan--tRNA ligase -
  DK43_RS00175 (DK43_00180) guaB 35786..37267 (+) 1482 WP_003027890.1 IMP dehydrogenase -
  DK43_RS00180 (DK43_00185) recF 37356..38453 (-) 1098 WP_003027889.1 DNA replication/repair protein RecF Machinery gene
  DK43_RS00185 (DK43_00190) yaaA 38455..38832 (-) 378 WP_003027888.1 S4 domain-containing protein YaaA -
  DK43_RS00190 (DK43_00195) - 39008..40255 (+) 1248 WP_037582553.1 pitrilysin family protein -
  DK43_RS00195 (DK43_00200) - 40255..41550 (+) 1296 WP_003027886.1 pitrilysin family protein -
  DK43_RS00200 (DK43_00205) rodZ 41609..42430 (+) 822 WP_003027884.1 cytoskeleton protein RodZ -
  DK43_RS00205 (DK43_00210) pgsA 42441..42980 (+) 540 WP_003027883.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41938.33 Da        Isoelectric Point: 8.9222

>NTDB_id=106087 DK43_RS00180 WP_003027889.1 37356..38453(-) (recF) [Streptococcus anginosus strain SA1]
MWLKKLQIQHFRNYEATEIDFHSGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIYFSKDTLKISGQLVKQTGK
ISLEIDLTPKGRITKVNHLKQSKLSDYVGNMNVILFAPEDLQLIKGAPALRRKFIDIELGQIKPIYLSDLSHYHHVLKQR
NTYLKTAKTIDETFLAVLDDQLVEFGCRVMQHRIEFLKKLEHFGQQKHLELSSHLENLTIKYCSSVPLSDSNKLKESFQI
ALKQSRSRDLFKKNTGVGPHRDDIAFCINDMNANFGSQGQHRSVVLSLKLAEIELMETVTKEKPILLLDDVMSELDNSRQ
LNLLETISQNIQTFMTTTTLEHLQNVPSNIKIFSIHEGHLTEDKV

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=106087 DK43_RS00180 WP_003027889.1 37356..38453(-) (recF) [Streptococcus anginosus strain SA1]
ATGTGGTTAAAAAAGTTACAAATTCAACATTTTCGTAATTATGAAGCAACTGAAATAGATTTTCATTCTGGTCTCAATAT
TTTTCTAGGCCAAAATGCTCAAGGAAAAACAAATATCTTGGAAGCCATCTATTTTCTTGCATTGACACGAAGTCATCGAA
CTCGTTCAGACAAAGATTTAATTTATTTCTCCAAAGACACCCTAAAAATATCTGGACAACTTGTCAAGCAAACGGGGAAA
ATCTCTTTAGAGATTGACTTGACACCTAAAGGAAGAATTACAAAGGTTAATCATCTAAAACAAAGCAAACTATCTGATTA
TGTTGGAAATATGAATGTTATTTTATTTGCTCCAGAAGATTTACAGTTGATTAAAGGAGCTCCAGCCCTTAGACGAAAAT
TTATTGATATAGAATTGGGGCAAATTAAGCCAATCTATTTATCTGATTTATCACATTACCACCATGTTTTAAAACAAAGA
AATACTTATTTAAAAACAGCAAAAACAATAGATGAGACTTTTTTAGCAGTTTTAGATGATCAACTAGTGGAATTTGGTTG
TCGTGTTATGCAGCATCGGATAGAATTTCTCAAAAAATTAGAGCACTTTGGTCAACAAAAACATTTGGAACTCTCAAGTC
ATTTAGAAAACTTAACCATTAAGTACTGCTCTTCTGTTCCACTTTCAGATTCCAATAAGTTAAAAGAATCCTTCCAAATT
GCATTAAAGCAAAGCCGTAGTAGAGATTTATTTAAAAAAAATACTGGAGTTGGTCCCCATCGAGATGATATTGCTTTTTG
TATCAATGACATGAATGCCAATTTTGGTAGTCAAGGACAACATCGAAGTGTGGTTTTATCTCTCAAACTGGCAGAAATTG
AGCTCATGGAAACTGTTACTAAAGAAAAACCAATTCTTCTACTTGACGATGTTATGAGTGAACTTGACAATAGTCGTCAA
CTTAATTTACTTGAAACTATTTCTCAAAATATCCAAACATTTATGACAACAACAACTCTAGAACATCTACAAAACGTGCC
TTCTAATATTAAAATTTTCTCAATTCATGAAGGACATTTAACTGAAGATAAGGTGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD7NID5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

72.346

98.082

0.71
  recF Bacillus subtilis subsp. subtilis str. 168

47.414

95.342

0.452