Detailed information NTG1060584

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEPLV_RS23550
• Genome accession: NZ_CP171230
• Coordinates: 5062186..5063058 (+)
• Length: 290 a.a.
• NCBI ID: WP_023092875.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PAXJ
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5057186..5068058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPLV_RS23535 (ACEPLV_23535)	-	5058566..5059033 (-)	468	WP_003161762.1	pilin	-
ACEPLV_RS23540 (ACEPLV_23540)	pilB	5059264..5060964 (+)	1701	WP_003107297.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACEPLV_RS23545 (ACEPLV_23545)	pilC	5060968..5062185 (+)	1218	WP_003161763.1	type II secretion system F family protein	Machinery gene
ACEPLV_RS23550 (ACEPLV_23550)	pilD	5062186..5063058 (+)	873	WP_023092875.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
ACEPLV_RS23555 (ACEPLV_23555)	coaE	5063055..5063666 (+)	612	WP_003112838.1	dephospho-CoA kinase	-
ACEPLV_RS23560 (ACEPLV_23560)	yacG	5063663..5063863 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
ACEPLV_RS23565 (ACEPLV_23565)	-	5063900..5064109 (-)	210	WP_020750398.1	hypothetical protein	-
ACEPLV_RS23570 (ACEPLV_23570)	-	5064215..5064904 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
ACEPLV_RS23575 (ACEPLV_23575)	-	5064901..5065371 (-)	471	WP_003094664.1	hypothetical protein	-
ACEPLV_RS23580 (ACEPLV_23580)	-	5065368..5065793 (-)	426	WP_003161766.1	GNAT family N-acetyltransferase	-
ACEPLV_RS23585 (ACEPLV_23585)	-	5065926..5066555 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
ACEPLV_RS23590 (ACEPLV_23590)	-	5066552..5067001 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
ACEPLV_RS23595 (ACEPLV_23595)	-	5067027..5067197 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31861.91 Da
• Isoelectric Point: 7.7068

>NTDB_id=1060584 ACEPLV_RS23550 WP_023092875.1 5062186..5063058(+) (pilD) [Pseudomonas aeruginosa strain PAXJ]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVMV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=1060584 ACEPLV_RS23550 WP_023092875.1 5062186..5063058(+) (pilD) [Pseudomonas aeruginosa strain PAXJ]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGATGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.64	95.862	0.476