Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACF0HW_RS01815 Genome accession   NZ_CP171208
Coordinates   351319..352008 (+) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HN11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346319..357008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS01790 degS 346603..347766 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACF0HW_RS01795 degU 347843..348532 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACF0HW_RS01800 - 348630..349478 (+) 849 WP_003151387.1 DegV family protein -
  ACF0HW_RS01805 comFA 349586..350971 (+) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  ACF0HW_RS01810 - 351029..351313 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  ACF0HW_RS01815 comFC 351319..352008 (+) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  ACF0HW_RS01820 - 352082..352501 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ACF0HW_RS01825 flgM 352571..352837 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACF0HW_RS01830 - 352852..353334 (+) 483 WP_003151394.1 flagellar protein FlgN -
  ACF0HW_RS01835 flgK 353350..354867 (+) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  ACF0HW_RS01840 flgL 354879..355796 (+) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  ACF0HW_RS01845 - 355887..356456 (+) 570 WP_023357152.1 DUF6470 family protein -
  ACF0HW_RS01850 fliW 356486..356917 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=1060455 ACF0HW_RS01815 WP_197197403.1 351319..352008(+) (comFC) [Bacillus amyloliquefaciens strain HN11]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1060455 ACF0HW_RS01815 WP_197197403.1 351319..352008(+) (comFC) [Bacillus amyloliquefaciens strain HN11]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment