Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACFN7Z_RS01875 Genome accession   NZ_CP171157
Coordinates   406588..407235 (-) Length   215 a.a.
NCBI ID   WP_125273538.1    Uniprot ID   -
Organism   Acinetobacter sp. P1332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401588..412235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFN7Z_RS01840 (ACFN7Z_01840) mlaE 401931..402710 (+) 780 WP_004691368.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACFN7Z_RS01845 (ACFN7Z_01845) - 402710..403384 (+) 675 WP_395442548.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACFN7Z_RS01850 (ACFN7Z_01850) - 403405..404040 (+) 636 WP_004691364.1 phospholipid-binding protein MlaC -
  ACFN7Z_RS01855 (ACFN7Z_01855) - 404052..404339 (+) 288 WP_395442549.1 lipid asymmetry maintenance protein MlaB -
  ACFN7Z_RS01860 (ACFN7Z_01860) - 404421..405434 (-) 1014 WP_004691361.1 CorA family divalent cation transporter -
  ACFN7Z_RS01865 (ACFN7Z_01865) - 405587..406186 (+) 600 WP_004691359.1 TIGR00730 family Rossman fold protein -
  ACFN7Z_RS01870 (ACFN7Z_01870) - 406183..406587 (+) 405 WP_004691357.1 NUDIX domain-containing protein -
  ACFN7Z_RS01875 (ACFN7Z_01875) comF 406588..407235 (-) 648 WP_125273538.1 ComF family protein Machinery gene
  ACFN7Z_RS01880 (ACFN7Z_01880) recG 407222..409267 (-) 2046 WP_114836551.1 ATP-dependent DNA helicase RecG -
  ACFN7Z_RS01885 (ACFN7Z_01885) - 409301..410116 (+) 816 WP_395442550.1 NAD-dependent epimerase/dehydratase family protein -
  ACFN7Z_RS01890 (ACFN7Z_01890) - 410297..411004 (-) 708 WP_114836549.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24934.08 Da        Isoelectric Point: 9.2023

>NTDB_id=1060361 ACFN7Z_RS01875 WP_125273538.1 406588..407235(-) (comF) [Acinetobacter sp. P1332]
MPMFSHLLHTAKQLLHRAQPCQLCGIVRADLHSVCLDCWQQLPLHPQTIEKQELSIHVAGHYQYPLDHLIQQFKYEQQLH
WQPLLSGILQQIRFPKVQAIVPMPISSQRLAERGYNQSMILAKDLAKQLNVPIWQPVIRLHQHSQKGLSRLERLDQIHQQ
FKIDPQQRQYAKRYRRVLILDDVVTTGSSIQALTLQLEQLGCHKVSAACIAYALE

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1060361 ACFN7Z_RS01875 WP_125273538.1 406588..407235(-) (comF) [Acinetobacter sp. P1332]
ATGCCTATGTTTAGTCATCTGCTACATACTGCCAAACAGTTGCTACACAGAGCACAGCCCTGTCAGTTGTGTGGCATTGT
ACGCGCAGATCTACATTCGGTCTGTTTGGATTGCTGGCAACAACTCCCACTGCATCCACAGACCATTGAAAAACAAGAGC
TGAGTATTCATGTGGCGGGACATTATCAATATCCTTTAGATCATCTTATTCAGCAGTTCAAATATGAACAACAACTGCAT
TGGCAGCCTCTACTGTCAGGCATTCTTCAGCAAATTCGCTTCCCTAAAGTGCAAGCAATTGTTCCAATGCCGATTTCGAG
CCAGCGTTTAGCCGAACGTGGCTATAACCAATCAATGATCCTCGCCAAAGACTTAGCCAAGCAGCTAAATGTGCCCATTT
GGCAACCTGTGATACGACTGCATCAACATTCACAAAAAGGACTCAGTCGACTGGAACGCTTAGATCAAATTCATCAACAG
TTTAAAATCGATCCACAGCAACGTCAGTACGCAAAACGCTACCGGCGTGTTTTGATTTTGGATGATGTTGTGACCACAGG
CAGCTCCATTCAGGCACTGACTTTACAACTTGAACAATTGGGTTGTCATAAAGTCAGCGCCGCGTGTATTGCCTATGCAC
TTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.872

98.14

0.558
  comF Acinetobacter baumannii D1279779

56.872

98.14

0.558

Multiple sequence alignment