Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACF8MK_RS01720 Genome accession   NZ_CP171154
Coordinates   423290..423994 (+) Length   234 a.a.
NCBI ID   WP_392537920.1    Uniprot ID   -
Organism   Legionella sp. 227     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418290..428994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8MK_RS01700 (ACF8MK_01700) radA 419702..421054 (-) 1353 WP_392537918.1 DNA repair protein RadA -
  ACF8MK_RS01705 (ACF8MK_01705) - 421237..421458 (+) 222 WP_265704222.1 exodeoxyribonuclease VII small subunit -
  ACF8MK_RS01710 (ACF8MK_01710) - 421448..422335 (+) 888 WP_265704221.1 polyprenyl synthetase family protein -
  ACF8MK_RS01715 (ACF8MK_01715) bioC 422396..423253 (-) 858 WP_392537919.1 malonyl-ACP O-methyltransferase BioC -
  ACF8MK_RS01720 (ACF8MK_01720) comFC 423290..423994 (+) 705 WP_392537920.1 ComF family protein Machinery gene
  ACF8MK_RS01725 (ACF8MK_01725) - 424133..424486 (-) 354 WP_392537921.1 hypothetical protein -
  ACF8MK_RS01730 (ACF8MK_01730) - 424624..424989 (-) 366 WP_392537922.1 hypothetical protein -
  ACF8MK_RS01735 (ACF8MK_01735) - 425088..426152 (-) 1065 WP_392537923.1 M50 family metallopeptidase -
  ACF8MK_RS01740 (ACF8MK_01740) - 426164..426445 (-) 282 WP_265704215.1 hypothetical protein -
  ACF8MK_RS01745 (ACF8MK_01745) hemA 426766..428040 (+) 1275 WP_392537924.1 glutamyl-tRNA reductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26987.71 Da        Isoelectric Point: 9.5857

>NTDB_id=1060325 ACF8MK_RS01720 WP_392537920.1 423290..423994(+) (comFC) [Legionella sp. 227]
MRQKIWSLTQSLRLYSICTLCNQFHNNKMAVCTPCIEFMPYLGPACRQCAYPLPDTHLQICGRCIKKPPHFDRAYINYTF
EEPLRNLLHQFKYHEGLYLGSFLSHLMINSLSKFENLPQCLIPVPMHPQRIKLRGFNQAAVLVRLLAKKLDLPYDLTSCQ
KIRNTEPQASLDGEQRQKNLRHAFKSKKLPWQHVAIIDDLLTTGSTANELAFTLKKSGVKQVDIWCCARTVGKL

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1060325 ACF8MK_RS01720 WP_392537920.1 423290..423994(+) (comFC) [Legionella sp. 227]
GTGCGCCAGAAAATATGGAGTTTAACACAAAGTTTACGCTTATACTCAATATGTACTTTATGCAATCAATTTCATAATAA
TAAAATGGCAGTTTGTACCCCTTGCATTGAATTCATGCCTTATCTAGGCCCTGCGTGCCGACAGTGTGCTTATCCTTTAC
CGGATACCCATCTGCAAATCTGTGGCCGTTGTATTAAAAAACCACCTCACTTTGATCGAGCCTATATTAATTACACCTTT
GAAGAACCGCTACGCAATCTTTTACATCAATTTAAATATCATGAGGGACTTTATCTAGGCTCTTTTTTAAGTCATTTAAT
GATTAATTCACTGTCAAAATTTGAAAATCTACCTCAATGTTTAATCCCAGTTCCTATGCATCCACAACGAATTAAATTAC
GTGGGTTCAATCAGGCTGCAGTTTTAGTTCGTTTATTGGCAAAAAAATTAGATTTACCTTACGACTTAACCAGTTGCCAA
AAAATTCGCAACACTGAGCCTCAAGCAAGTCTTGATGGAGAACAAAGACAAAAAAATTTGCGCCATGCCTTCAAAAGTAA
AAAACTTCCTTGGCAGCATGTTGCGATTATTGATGATCTCTTAACAACAGGAAGCACAGCAAATGAACTGGCATTCACTT
TAAAAAAATCAGGGGTGAAACAGGTGGATATTTGGTGTTGTGCACGAACCGTAGGTAAATTGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

65.236

99.573

0.65
  comFC Legionella pneumophila strain ERS1305867

65.128

83.333

0.543

Multiple sequence alignment