Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACF3OH_RS07320 Genome accession   NZ_CP171117
Coordinates   1387752..1388057 (-) Length   101 a.a.
NCBI ID   WP_204589329.1    Uniprot ID   -
Organism   Chryseomicrobium aureum strain WGS1526     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382752..1393057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OH_RS07290 (ACF3OH_07290) gcvPA 1383141..1384487 (-) 1347 WP_392456728.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACF3OH_RS07295 (ACF3OH_07295) gcvT 1384507..1385580 (-) 1074 WP_392456730.1 glycine cleavage system aminomethyltransferase GcvT -
  ACF3OH_RS07300 (ACF3OH_07300) - 1385930..1386445 (-) 516 WP_392453878.1 shikimate kinase -
  ACF3OH_RS07305 (ACF3OH_07305) - 1386634..1387071 (-) 438 WP_392453879.1 competence type IV pilus minor pilin ComGF -
  ACF3OH_RS07310 (ACF3OH_07310) - 1387059..1387328 (-) 270 WP_392453880.1 hypothetical protein -
  ACF3OH_RS07315 (ACF3OH_07315) comGD 1387321..1387746 (-) 426 WP_392453881.1 competence type IV pilus minor pilin ComGD -
  ACF3OH_RS07320 (ACF3OH_07320) comGC 1387752..1388057 (-) 306 WP_204589329.1 competence type IV pilus major pilin ComGC Machinery gene
  ACF3OH_RS07325 (ACF3OH_07325) - 1388070..1389053 (-) 984 WP_392453882.1 type II secretion system F family protein -
  ACF3OH_RS07330 (ACF3OH_07330) comGA 1389057..1390049 (-) 993 WP_392453883.1 competence type IV pilus ATPase ComGA -
  ACF3OH_RS07335 (ACF3OH_07335) - 1390291..1390533 (+) 243 WP_204589389.1 DUF2626 family protein -
  ACF3OH_RS07340 (ACF3OH_07340) - 1390580..1391212 (-) 633 WP_392453884.1 MBL fold metallo-hydrolase -
  ACF3OH_RS07345 (ACF3OH_07345) - 1391355..1391534 (+) 180 WP_204589333.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11257.29 Da        Isoelectric Point: 6.2857

>NTDB_id=1060170 ACF3OH_RS07320 WP_204589329.1 1387752..1388057(-) (comGC) [Chryseomicrobium aureum strain WGS1526]
MRWLKNQKGFTLVEMMIVLLIISVLLLVTIPNIARQTATIDEKGCEAYRTMLSSQIESYKLEFKKKPDLADLQSEGFVKE
GPLVCPDGTELTIAAGVVNNK

Nucleotide


Download         Length: 306 bp        

>NTDB_id=1060170 ACF3OH_RS07320 WP_204589329.1 1387752..1388057(-) (comGC) [Chryseomicrobium aureum strain WGS1526]
ATGAGATGGCTTAAAAATCAAAAAGGTTTTACTTTAGTAGAAATGATGATCGTTTTATTGATTATTTCTGTATTATTGCT
TGTGACAATTCCTAATATCGCACGACAAACCGCGACGATTGATGAAAAGGGATGCGAGGCCTATCGTACGATGCTTTCTA
GTCAAATCGAGTCTTATAAACTCGAGTTTAAGAAAAAACCAGACCTTGCTGACTTACAATCTGAGGGATTTGTAAAAGAG
GGACCATTGGTTTGCCCAGACGGTACAGAATTAACGATAGCTGCAGGTGTAGTTAACAATAAGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

52.128

93.069

0.485
  comGC Staphylococcus aureus MW2

47.423

96.04

0.455
  comGC Staphylococcus aureus N315

47.423

96.04

0.455

Multiple sequence alignment