Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   ACF3NW_RS12140 Genome accession   NZ_CP171110
Coordinates   2379642..2382887 (+) Length   1081 a.a.
NCBI ID   WP_392423886.1    Uniprot ID   -
Organism   Eikenella halliae strain WGS1533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2374642..2387887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3NW_RS12100 (ACF3NW_12100) - 2375565..2375912 (-) 348 WP_392423884.1 DUF2069 domain-containing protein -
  ACF3NW_RS12105 (ACF3NW_12105) - 2375964..2376215 (-) 252 WP_314253476.1 hypothetical protein -
  ACF3NW_RS12110 (ACF3NW_12110) - 2376254..2377231 (-) 978 WP_314253475.1 hypothetical protein -
  ACF3NW_RS12115 (ACF3NW_12115) - 2377218..2377367 (-) 150 WP_392423893.1 hypothetical protein -
  ACF3NW_RS12120 (ACF3NW_12120) - 2377387..2377520 (-) 134 Protein_2356 IS5/IS1182 family transposase -
  ACF3NW_RS12125 (ACF3NW_12125) tatC 2377668..2378417 (-) 750 WP_314253473.1 twin-arginine translocase subunit TatC -
  ACF3NW_RS12130 (ACF3NW_12130) tatB 2378414..2378890 (-) 477 WP_314253471.1 Sec-independent protein translocase protein TatB -
  ACF3NW_RS12135 (ACF3NW_12135) tatA 2378894..2379103 (-) 210 WP_314253469.1 Sec-independent protein translocase subunit TatA -
  ACF3NW_RS12140 (ACF3NW_12140) recC 2379642..2382887 (+) 3246 WP_392423886.1 exodeoxyribonuclease V subunit gamma Machinery gene
  ACF3NW_RS12155 (ACF3NW_12155) dusA 2383334..2384335 (+) 1002 WP_314253465.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ACF3NW_RS12160 (ACF3NW_12160) yccS 2384666..2386861 (-) 2196 WP_314253463.1 YccS family putative transporter -

Sequence

Protein


Download         Length: 1081 a.a.        Molecular weight: 120132.81 Da        Isoelectric Point: 5.8769

>NTDB_id=1060130 ACF3NW_RS12140 WP_392423886.1 2379642..2382887(+) (recC) [Eikenella halliae strain WGS1533]
MLHLYSSNRLEFLAETAVALMQTAPPEAVFAPEEIVVQSQGMRRYLNHYLAERSGIAANLNFSLPAALSWQLTRRFLPDA
PRLNPFAPEVLRWRLLPLLESADSALPAVLQGYLKSSTAAAYHLAGRLADVFDQYLVYRPHWLAQWEQGKLNGLGADEAW
QAALWRTLAADTPAAHRAAQHERLLAALNPARLPQRYVAFGISTLAPVYLDLLQALAEHTDVHLFAVNPSQQYWGDIQSP
KRLAAQAEPAAEEAGHPLLSSLGKQGRDFFDRLAVSTRAMEQVELFSAPPESPSLLQRLQADIQLLRLPEKGSAQMDGSI
VIQAAHSPLRELQILKEHLLRRLAANPELQPHHIAVLTPAVEDYLPFIHAVFGEAAPGSRALPYSVADVRLSRSQPLMLL
AEQLITLMQSRFETERLLPLLDAQAVRRHWQIDETDAEFLRRSVAELNVHWGADAEMRAGHGGSGKAFTWQQAAERSVLG
WLLPEGEDTLWQGVHPWPADLARQPAQAAWFVLLGKLREHHRRWQSPVSIEGWIERFRALLADAAGDTPAEADQAAWQQI
SQALAAWQEEAALAGYAAALPPDTACQHLRRFFGQSSEAAFLRGGITFCSMVPMRSLPFDTVCLLGLNDGKYPRQTPAPA
FDLIARHPQSGDRPRRDDDRYLFLESLLSARSHLYLSYIGRDHLKDETQAPSPLLSELIDTLAQMASQSSADFAAAHVCQ
HPLQAFSTRYFAPQSDGESSAEFSENGLSGSLSGLRQDYAQALNQPAAEAAPFIGDTPPEAAAEPTISLDSFLNFWNNPV
RHWLRRALQWQRPYADRPADSAEPYAIERSDEVKQRYLDARRQREDFAQTEAKLQADSLLPASLLGEILQEPERTAAKQL
DSELLASPREPDFPFRFEHGGHTLVGSLTHLHQHGQIFYRAAELKAPAEIGLWLQHLVYCAVHPQAQATHLVSLDSPQTL
PPLPQAEAAEQLARWLDYYLLGQQQPLPFFPRTSLAAAKACTAEDLAVQRLAEKALAAARSKYRDSRDYPGQNQDPEVAQ
VYGRDEDEPINSPLFARLVLALLAPLYLRLAAEEGTGKKAG

Nucleotide


Download         Length: 3246 bp        

>NTDB_id=1060130 ACF3NW_RS12140 WP_392423886.1 2379642..2382887(+) (recC) [Eikenella halliae strain WGS1533]
ATGCTCCATCTTTATTCTTCCAACCGCCTCGAATTCCTTGCCGAAACCGCCGTTGCGCTGATGCAGACTGCGCCGCCGGA
AGCGGTGTTTGCGCCGGAGGAAATCGTGGTGCAGAGCCAGGGGATGCGCCGTTATCTCAACCACTATTTGGCCGAGCGCA
GCGGCATTGCGGCCAATTTGAATTTCAGCCTGCCGGCGGCACTGAGCTGGCAGCTCACGCGCCGCTTCCTGCCGGATGCG
CCGCGCCTGAACCCGTTTGCGCCGGAAGTGTTGCGCTGGCGGCTGCTGCCGCTGCTGGAGAGCGCCGATTCGGCCCTGCC
CGCAGTGTTGCAGGGCTACCTGAAAAGCAGCACGGCGGCGGCTTATCATTTGGCGGGGCGGCTGGCGGACGTGTTCGACC
AATATTTGGTGTACCGCCCGCATTGGCTCGCGCAATGGGAGCAGGGCAAGCTCAACGGTTTGGGTGCAGACGAAGCCTGG
CAGGCCGCGTTGTGGCGCACGCTCGCCGCCGACACCCCCGCCGCCCACCGCGCCGCGCAGCACGAACGGCTGCTGGCCGC
GCTGAATCCGGCGCGCCTGCCGCAGCGTTATGTGGCGTTCGGCATTTCCACGCTGGCGCCGGTGTATCTGGATTTGTTGC
AGGCCTTGGCCGAACACACCGATGTGCACCTGTTCGCGGTCAATCCCAGCCAGCAATACTGGGGCGACATCCAAAGCCCG
AAACGGCTGGCCGCGCAGGCCGAACCCGCAGCCGAAGAAGCTGGCCACCCGCTGCTCTCCTCGCTGGGCAAACAGGGGCG
CGACTTTTTCGACCGCCTGGCCGTGAGCACCCGCGCCATGGAGCAGGTAGAACTCTTCTCTGCGCCGCCCGAATCGCCCA
GCCTGTTGCAACGCCTGCAGGCCGATATCCAGCTGTTGAGGCTACCTGAAAAAGGTAGCGCGCAGATGGACGGCAGCATC
GTGATCCAAGCCGCCCACAGCCCCCTGCGCGAGCTGCAAATCCTCAAAGAGCACCTGTTGCGCCGTTTGGCGGCCAACCC
CGAGCTGCAGCCGCACCACATCGCCGTGCTCACCCCCGCCGTGGAAGACTACCTGCCCTTCATCCACGCCGTATTCGGCG
AAGCCGCGCCCGGCAGCCGCGCCCTGCCGTATTCTGTGGCCGACGTGCGCCTCAGCCGCAGCCAGCCTTTGATGCTGCTG
GCCGAGCAGCTCATCACCCTGATGCAGAGCCGCTTTGAAACCGAACGCCTGCTGCCCCTGCTCGATGCCCAAGCAGTGCG
CCGCCATTGGCAGATTGACGAAACCGATGCCGAATTTCTGCGCCGCAGCGTGGCCGAACTCAACGTGCATTGGGGCGCGG
ATGCCGAAATGCGCGCCGGGCACGGCGGCAGCGGCAAAGCCTTCACTTGGCAGCAGGCCGCCGAACGCAGCGTGCTGGGC
TGGCTGCTGCCCGAGGGCGAAGATACGCTGTGGCAGGGCGTGCACCCCTGGCCGGCCGATTTGGCTCGCCAGCCTGCCCA
AGCCGCCTGGTTTGTGCTGCTGGGCAAGCTGCGCGAACACCACCGCCGCTGGCAAAGCCCCGTGTCCATCGAAGGCTGGA
TCGAACGTTTCCGCGCCCTCTTGGCCGATGCCGCAGGCGACACTCCCGCCGAAGCCGACCAGGCCGCCTGGCAGCAAATC
AGCCAGGCCTTGGCCGCCTGGCAGGAAGAAGCCGCGCTGGCGGGCTATGCCGCCGCCCTGCCGCCCGACACCGCCTGCCA
GCACCTGCGCCGCTTCTTCGGCCAAAGCAGCGAAGCCGCCTTTTTGCGCGGCGGCATCACCTTCTGCAGCATGGTACCCA
TGCGCAGCCTGCCGTTCGACACCGTGTGCCTGCTCGGCCTGAACGACGGCAAATACCCGCGCCAAACCCCCGCCCCCGCC
TTCGATCTCATCGCCCGCCACCCCCAATCCGGCGACCGCCCCCGCCGCGACGACGACCGCTACCTGTTCCTCGAATCCCT
GCTCAGCGCCCGCAGCCACCTTTATCTTTCCTACATCGGCCGCGACCACCTCAAAGACGAAACCCAAGCGCCCTCGCCGC
TGCTGAGCGAACTCATCGACACGCTGGCGCAAATGGCCAGCCAAAGCAGCGCCGATTTCGCCGCTGCCCATGTGTGCCAA
CATCCCCTGCAAGCCTTTTCCACCCGCTATTTCGCCCCGCAATCGGATGGGGAAAGTTCAGCCGAATTTAGCGAAAACGG
GCTTTCAGGTAGCCTATCCGGCCTCCGCCAAGACTACGCCCAAGCCCTCAACCAACCCGCCGCCGAAGCCGCGCCCTTTA
TCGGCGATACCCCGCCCGAAGCAGCCGCCGAGCCCACCATATCGCTCGACAGTTTCCTAAACTTCTGGAACAACCCCGTG
CGCCATTGGCTGCGCCGCGCCCTGCAATGGCAGCGCCCCTATGCCGATCGCCCCGCCGATTCCGCCGAGCCCTACGCCAT
CGAGCGCTCCGACGAAGTGAAACAACGCTACCTCGACGCCCGCCGCCAGCGCGAAGATTTCGCCCAAACCGAAGCCAAGC
TGCAGGCCGACAGCCTCCTGCCCGCCAGCCTGCTCGGCGAAATCCTGCAAGAGCCCGAGCGCACCGCCGCCAAGCAGCTC
GATTCCGAATTGCTCGCCAGCCCGCGCGAGCCAGATTTTCCCTTCCGTTTCGAGCACGGCGGCCACACCCTCGTCGGCAG
CCTCACCCATCTGCACCAACACGGCCAAATCTTCTACCGCGCCGCCGAACTCAAAGCCCCCGCCGAAATCGGTCTGTGGC
TGCAACACCTGGTGTATTGCGCCGTTCACCCCCAAGCGCAAGCCACCCACCTCGTCTCCCTCGACAGCCCGCAAACCCTG
CCGCCGCTGCCGCAAGCGGAAGCTGCCGAGCAGCTTGCCCGCTGGCTCGACTACTACCTGCTCGGCCAACAACAGCCGCT
GCCCTTCTTCCCCCGCACCAGCCTGGCCGCCGCCAAAGCCTGCACCGCCGAAGACCTCGCCGTCCAAAGGCTAGCTGAAA
AAGCCCTGGCCGCCGCCCGCAGCAAATACCGCGACAGCCGCGACTACCCCGGCCAAAACCAAGACCCCGAAGTCGCCCAA
GTGTACGGCCGCGATGAAGACGAACCGATTAACAGCCCCCTGTTCGCCCGCCTCGTTTTAGCGCTGCTCGCCCCGCTATA
TTTGCGGCTGGCCGCAGAAGAAGGCACAGGCAAAAAGGCCGGTTAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(785-1001)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

47.441

100

0.48

Multiple sequence alignment