Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   ACF3NW_RS07385 Genome accession   NZ_CP171110
Coordinates   1455126..1456829 (-) Length   567 a.a.
NCBI ID   WP_392423203.1    Uniprot ID   -
Organism   Eikenella halliae strain WGS1533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1450126..1461829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3NW_RS07370 (ACF3NW_07370) - 1450634..1452319 (-) 1686 Protein_1428 ESPR-type extended signal peptide-containing protein -
  ACF3NW_RS07375 (ACF3NW_07375) - 1453137..1453529 (-) 393 WP_392423201.1 hypothetical protein -
  ACF3NW_RS07380 (ACF3NW_07380) - 1453573..1454733 (-) 1161 WP_392423202.1 beta-ketoacyl-ACP synthase III -
  ACF3NW_RS07385 (ACF3NW_07385) recD 1455126..1456829 (-) 1704 WP_392423203.1 exodeoxyribonuclease V subunit alpha Machinery gene
  ACF3NW_RS07390 (ACF3NW_07390) leuC 1457161..1458558 (+) 1398 Protein_1432 3-isopropylmalate dehydratase large subunit -
  ACF3NW_RS07395 (ACF3NW_07395) - 1458672..1459223 (+) 552 WP_392423204.1 hypothetical protein -
  ACF3NW_RS07400 (ACF3NW_07400) - 1459337..1459726 (+) 390 WP_314254309.1 hypothetical protein -
  ACF3NW_RS07405 (ACF3NW_07405) - 1459859..1460047 (+) 189 WP_314254311.1 hypothetical protein -
  ACF3NW_RS07410 (ACF3NW_07410) leuD 1460151..1460792 (+) 642 WP_392423205.1 3-isopropylmalate dehydratase small subunit -
  ACF3NW_RS07415 (ACF3NW_07415) - 1460864..1461217 (+) 354 WP_314254205.1 hypothetical protein -
  ACF3NW_RS07420 (ACF3NW_07420) - 1461284..1461652 (+) 369 WP_314254203.1 TIGR02328 family protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 61143.88 Da        Isoelectric Point: 6.9054

>NTDB_id=1060115 ACF3NW_RS07385 WP_392423203.1 1455126..1456829(-) (recD) [Eikenella halliae strain WGS1533]
MTEYRYPAAQAAAEVLQCLAPQAAELVLPLLDELFVAQEGGHSYITLAPQEAEALRQAAPVVGDGGAFTPLVLRGRRLFG
GRLFALERSVAAELRRIARSRVGLPENAGLRQRLRDWFPDAGHNGQRLAAALAVLQPLMLVTGGPGTGKTTTVAKLLALL
CADAAEMPRIALTAPTGKAAAHMTRSLHRALGSFDAGSERVLQHLTALEGQTVHRLLKLNPVVGRSKFNREQPLPFDIVV
ADEASMLDLPLLYQLLCAIPEHGRLILLGDENQLPPVGIGAVLPVLAQPTVLTAEEAAQLAEWLPEGVPFEVRDNPPPLA
GNVAQLEYSHRFDPQRGVGALAQAVVNGEAAAAEAAFARFPDDLFRLPETPAALARHFAKQHEAYWQAVSSGDPSACFVA
QQQLVVLAARRSQATDFNREYRKLLAAQGRAAEQGWFAGQVLMVAENDYAVNVFNGDIGIVLPHGDGLAAFFPDAGGFHA
VSLSRLPAHDTAFAMTVHKSQGSEYQEVWLLGDEADSALFDRTLLYTAITRARRRFGYAGQMSALTAAVQRKNHRRTGLG
EALRWAK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=1060115 ACF3NW_RS07385 WP_392423203.1 1455126..1456829(-) (recD) [Eikenella halliae strain WGS1533]
ATGACCGAATACCGTTACCCCGCCGCCCAAGCCGCTGCCGAAGTGTTGCAGTGTTTGGCACCGCAGGCCGCCGAGCTGGT
GTTGCCGCTGTTGGACGAACTGTTTGTTGCGCAAGAGGGCGGCCACAGCTACATCACGCTCGCGCCGCAAGAGGCGGAGG
CGTTGCGGCAGGCCGCGCCGGTGGTGGGCGACGGCGGCGCGTTCACGCCTTTGGTGTTGCGCGGGCGGCGGCTGTTTGGC
GGCAGGCTGTTTGCGTTGGAACGCAGTGTAGCCGCCGAATTGCGGCGGATTGCCCGCAGCCGGGTGGGGCTACCTGAAAA
TGCCGGGCTGCGGCAGCGGTTGCGCGATTGGTTTCCCGATGCCGGGCATAACGGGCAGCGGCTGGCTGCCGCGCTGGCGG
TGTTGCAGCCGCTGATGCTGGTAACCGGCGGGCCGGGAACGGGCAAAACCACCACGGTGGCCAAGCTGCTGGCGCTGTTG
TGCGCCGATGCGGCCGAGATGCCGCGCATCGCGCTCACCGCCCCCACCGGCAAGGCCGCCGCCCACATGACCCGTTCGCT
GCACCGCGCGTTGGGCAGTTTTGATGCGGGCAGCGAACGGGTGTTGCAGCATTTGACAGCATTGGAAGGACAAACTGTCC
ACCGTTTGTTGAAGCTGAACCCGGTTGTCGGCCGTTCGAAATTTAACCGCGAGCAGCCGCTGCCCTTCGATATTGTGGTG
GCCGACGAGGCTTCCATGCTGGATTTGCCGCTGCTGTACCAATTATTGTGCGCCATTCCCGAGCATGGCCGCCTGATTTT
GCTGGGCGATGAAAACCAGCTGCCGCCGGTGGGCATCGGTGCCGTATTGCCCGTGCTGGCGCAGCCTACCGTGCTCACGG
CCGAAGAAGCCGCGCAGTTGGCCGAGTGGCTGCCCGAAGGCGTACCGTTCGAAGTGCGGGATAACCCGCCGCCCTTGGCC
GGCAACGTGGCGCAGCTGGAATACAGCCACCGTTTCGACCCGCAGCGCGGCGTGGGCGCATTGGCGCAGGCCGTGGTGAA
CGGGGAGGCTGCCGCCGCCGAAGCCGCGTTTGCCCGCTTCCCCGACGACTTGTTCAGGCTACCTGAAACCCCCGCCGCCT
TGGCGCGGCACTTTGCCAAACAGCACGAGGCCTACTGGCAGGCGGTAAGCAGCGGCGACCCGTCGGCCTGCTTTGTCGCC
CAGCAGCAACTGGTGGTACTGGCTGCGCGGCGCAGCCAAGCGACGGATTTCAACCGCGAATACCGCAAGCTCCTGGCTGC
GCAGGGCAGGGCGGCGGAACAGGGCTGGTTTGCCGGGCAGGTGCTGATGGTGGCGGAAAACGATTATGCCGTGAATGTGT
TTAACGGCGACATCGGCATCGTGCTGCCGCACGGCGACGGGCTGGCTGCGTTTTTCCCCGATGCCGGCGGCTTCCACGCC
GTATCGCTCAGCCGGCTGCCCGCGCACGATACCGCCTTCGCCATGACCGTGCATAAAAGCCAAGGCTCGGAATACCAGGA
AGTGTGGCTCTTGGGCGACGAGGCCGACTCCGCTCTGTTCGACCGCACCCTGCTCTATACCGCCATCACCCGCGCCCGCC
GCCGCTTCGGCTACGCCGGCCAGATGAGCGCCCTCACCGCCGCCGTGCAACGCAAAAACCACCGCCGCACCGGTTTGGGC
GAGGCCTTGCGATGGGCGAAGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(492-534)

AAA domain (AAA_19)

(126-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

50.893

98.765

0.503

Multiple sequence alignment