Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACF3NW_RS03030 Genome accession   NZ_CP171110
Coordinates   576436..578034 (-) Length   532 a.a.
NCBI ID   WP_314251214.1    Uniprot ID   -
Organism   Eikenella halliae strain WGS1533     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 571436..583034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3NW_RS03000 (ACF3NW_03000) - 571518..571970 (+) 453 WP_392423553.1 hypothetical protein -
  ACF3NW_RS03005 (ACF3NW_03005) - 572038..572427 (+) 390 WP_126983026.1 hypothetical protein -
  ACF3NW_RS03010 (ACF3NW_03010) - 572835..573740 (-) 906 WP_392423554.1 LysR substrate-binding domain-containing protein -
  ACF3NW_RS03015 (ACF3NW_03015) - 573843..574433 (+) 591 WP_314251218.1 NAD(P)H-dependent oxidoreductase -
  ACF3NW_RS03020 (ACF3NW_03020) - 574969..575724 (-) 756 WP_314251217.1 class I SAM-dependent methyltransferase -
  ACF3NW_RS03025 (ACF3NW_03025) - 575889..576164 (-) 276 WP_314251216.1 hypothetical protein -
  ACF3NW_RS03030 (ACF3NW_03030) pilR 576436..578034 (-) 1599 WP_314251214.1 sigma-54 dependent transcriptional regulator Regulator
  ACF3NW_RS03035 (ACF3NW_03035) - 578027..579634 (-) 1608 WP_314251212.1 ATP-binding protein -
  ACF3NW_RS03040 (ACF3NW_03040) parC 579631..581943 (-) 2313 WP_314251210.1 DNA topoisomerase IV subunit A -
  ACF3NW_RS03045 (ACF3NW_03045) - 582204..582461 (+) 258 WP_314251208.1 SemiSWEET family transporter -

Sequence

Protein


Download         Length: 532 a.a.        Molecular weight: 58926.76 Da        Isoelectric Point: 4.7451

>NTDB_id=1060105 ACF3NW_RS03030 WP_314251214.1 576436..578034(-) (pilR) [Eikenella halliae strain WGS1533]
MSKQSLQKPVLVVDDEQDIRDLMEMTLMKMGLSVETAEGVNAAKKWLDSKKFSLVLTDMRMPDGSGLEVVEYINEKELDV
PVAVITAFGNADQAVQAIKTGAFDYLQKPITLAQLRTLVKSAIKIHEEDSRPAPAPAKEEPPPQADGADEGLPENEGLPE
NEEPQESKAAGRKIQPAADEQPATNPEDIPRLIGRSPQIEEARQMIRKLARTTVPVYIAGESGSGKEQAARSIHELSDRR
DRPFVAVNCGAIPENLMESEFFGYKKGSFTGADQDRLGFFQHAHGGTLFLDEVADLPLHMQVKLLRAIQEKAVRRIGDAQ
EVKVDVRIISATHKDLAALVAKGAFRQDLFYRLNVVSLTMPPLREMREDLPQLITQLLRKHRQGGDYTLTQPAKQALLQY
SYPGNFRELENILERAVALAANNTIDAADLQLSSSPLLDEDDDWGSAIAAVSQNSGSPDPAEAAAPENSGQLDNLPGFVL
GRTQVQDYLDDVERLIIEQALQKTRYNRTQAAKLLGISFRSMRYRMERLEIE

Nucleotide


Download         Length: 1599 bp        

>NTDB_id=1060105 ACF3NW_RS03030 WP_314251214.1 576436..578034(-) (pilR) [Eikenella halliae strain WGS1533]
ATGAGTAAACAAAGCCTGCAAAAACCGGTATTGGTTGTGGACGACGAACAAGACATCCGCGACCTGATGGAAATGACCCT
GATGAAAATGGGCTTGTCGGTGGAAACCGCCGAGGGCGTCAATGCCGCCAAAAAGTGGCTCGACAGCAAAAAATTCTCCC
TCGTGCTCACCGATATGCGCATGCCCGACGGCTCCGGGCTCGAAGTGGTGGAATACATCAACGAAAAAGAGCTCGACGTG
CCCGTGGCCGTAATTACCGCCTTCGGCAATGCCGACCAGGCCGTGCAGGCCATCAAAACCGGCGCCTTCGACTACCTGCA
AAAGCCCATCACCCTGGCGCAACTGCGCACCCTGGTGAAATCCGCCATCAAAATCCACGAAGAAGACAGCCGTCCCGCCC
CCGCACCGGCCAAAGAAGAGCCCCCGCCCCAAGCAGACGGCGCAGACGAAGGGCTACCTGAAAACGAGGGGCTACCTGAA
AACGAAGAGCCGCAAGAAAGCAAAGCCGCCGGCCGCAAGATCCAGCCCGCAGCCGACGAACAGCCTGCCACCAATCCCGA
AGACATCCCCCGCCTCATCGGCCGCTCCCCGCAAATCGAAGAAGCCCGGCAGATGATCCGCAAGCTCGCCCGCACCACCG
TGCCCGTGTATATCGCCGGCGAATCCGGTTCCGGTAAGGAGCAGGCTGCACGCAGCATCCACGAGCTCTCCGATCGGCGC
GACCGCCCCTTCGTGGCCGTAAACTGCGGCGCCATTCCCGAAAACCTGATGGAAAGCGAATTCTTCGGCTACAAAAAAGG
CAGCTTCACCGGCGCCGACCAAGACCGCCTCGGCTTCTTCCAACACGCCCACGGCGGCACCCTCTTCCTCGACGAAGTAG
CCGACCTGCCCCTGCATATGCAGGTGAAACTCCTGCGCGCCATTCAGGAAAAAGCCGTGCGCCGCATCGGTGACGCGCAA
GAAGTGAAAGTAGACGTGCGCATCATCTCCGCCACGCATAAAGACCTCGCCGCCCTCGTGGCCAAAGGCGCATTCCGGCA
AGACTTGTTCTACCGCCTCAACGTCGTCTCCCTCACCATGCCGCCCCTGCGCGAAATGCGCGAAGACCTGCCCCAGCTCA
TCACCCAGCTCTTGCGCAAGCACCGCCAAGGCGGCGACTACACCCTCACCCAGCCCGCCAAACAAGCCCTCCTGCAATAC
AGCTATCCTGGCAACTTCCGCGAGCTGGAAAACATCCTCGAACGCGCCGTCGCCCTGGCTGCCAACAACACCATCGACGC
CGCCGACCTCCAACTCTCCAGCTCCCCGCTATTGGATGAAGACGACGACTGGGGCAGCGCCATCGCCGCCGTCAGCCAAA
ACAGCGGCAGCCCCGACCCCGCCGAAGCAGCCGCCCCAGAAAACAGCGGCCAGCTCGACAACCTGCCCGGCTTCGTGCTC
GGCCGCACCCAAGTGCAAGACTACCTCGACGACGTAGAGCGGCTGATTATCGAGCAAGCCCTGCAAAAAACCCGCTACAA
CCGCACCCAGGCCGCCAAACTGCTCGGCATCAGCTTCCGCTCCATGCGCTACCGGATGGAACGCTTGGAAATCGAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-119)

Bacterial regulatory protein, Fis family (HTH_8)

(489-528)

Sigma-54 interaction domain (Sigma54_activat)

(192-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

48.231

100

0.487
  pilR Acinetobacter baumannii strain A118

40.301

99.812

0.402

Multiple sequence alignment