Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACF3OI_RS06680 Genome accession   NZ_CP170999
Coordinates   1286186..1287946 (-) Length   586 a.a.
NCBI ID   WP_392434357.1    Uniprot ID   -
Organism   Finegoldia magna strain WGS1513     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1281186..1292946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OI_RS06665 (ACF3OI_06665) - 1281508..1282457 (-) 950 Protein_1285 IS3 family transposase -
  ACF3OI_RS06670 (ACF3OI_06670) rlmD 1282815..1284305 (-) 1491 WP_392434353.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  ACF3OI_RS06675 (ACF3OI_06675) rcrQ 1284397..1286193 (-) 1797 WP_102164309.1 ABC transporter ATP-binding protein Regulator
  ACF3OI_RS06680 (ACF3OI_06680) rcrP 1286186..1287946 (-) 1761 WP_392434357.1 ABC transporter ATP-binding protein Regulator
  ACF3OI_RS06685 (ACF3OI_06685) - 1287921..1288397 (-) 477 WP_392434360.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACF3OI_RS06690 (ACF3OI_06690) thiC 1288554..1289855 (-) 1302 WP_306479088.1 phosphomethylpyrimidine synthase ThiC -
  ACF3OI_RS06695 (ACF3OI_06695) - 1290036..1290950 (-) 915 WP_306479089.1 cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein -
  ACF3OI_RS06700 (ACF3OI_06700) moaA 1290952..1291899 (-) 948 WP_392434365.1 GTP 3',8-cyclase MoaA -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 66422.39 Da        Isoelectric Point: 5.3247

>NTDB_id=1059997 ACF3OI_RS06680 WP_392434357.1 1286186..1287946(-) (rcrP) [Finegoldia magna strain WGS1513]
MIVLIRIIRYLNKKQWMQILLSFVFIITQVYLDLKIPDYMSKITMYVESPGHTVSDIIGEGKWMLLCAFGSLISAIIVGY
LASKVSASFSKDLRSRIFSKVESFSMKEINEFSTASLITRSTNDITQIQMVIVIGLQILIKAPIMAVWAITKIYNKGFEW
TMATAVTVLILIIFVAILMILVMPKFRIMQTLTDNINRILRENLTGLAVIRAYNSEEFREGKFEEANVELTNTQLFTSRA
MSTMFPAINLGMSVLTLVIYFIGAGLINAAGMMDKYVLFSNMVVFSSYAMQVVMSFMMMSMIFIMIPRAQISANRINEVL
DTELSIKDGDVDTSNEDYEYEIEFDNVSFKYTDSEQYILKDIDFKVKKGEKVAIIGSTGSGKSTILNLLLRFYDATEGVV
KIQGIDIRKYKLKFLYEKIGAVFQKSFLFKGNVKSNISFSEDGMDNEKIEQAADTSQSMEFIDKFDEKFDHEIAQLGKNV
SGGQKQRLSIARAVYKKPNIFLFDDSFSALDFKTDSELRHQLRENNPDATTIIVAQRVGSIMDSDQIIVLENGQIVGIGK
HKDLLKNCEVYSEIAYSQLTEEELNA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=1059997 ACF3OI_RS06680 WP_392434357.1 1286186..1287946(-) (rcrP) [Finegoldia magna strain WGS1513]
ATGATAGTTTTGATAAGAATAATTAGATATTTGAATAAAAAACAATGGATGCAGATACTTTTGAGTTTTGTGTTTATCAT
CACTCAAGTGTATTTGGATTTGAAAATTCCGGATTATATGTCGAAAATCACGATGTATGTGGAAAGTCCGGGTCATACTG
TAAGTGATATTATCGGCGAAGGAAAATGGATGCTTTTGTGTGCATTCGGATCTTTGATTTCAGCAATTATCGTAGGATAT
TTGGCGTCGAAGGTATCGGCGTCATTTTCTAAAGATTTGAGGTCTAGAATATTTTCCAAGGTGGAAAGTTTCTCAATGAA
AGAAATCAACGAATTTTCCACAGCAAGTTTGATAACTAGATCTACAAATGATATTACTCAAATTCAAATGGTAATAGTGA
TAGGATTACAAATTTTGATTAAAGCTCCAATAATGGCTGTGTGGGCTATCACGAAAATCTACAACAAAGGATTTGAATGG
ACAATGGCGACTGCTGTCACTGTGTTGATTTTAATCATTTTCGTTGCAATTCTAATGATTTTGGTTATGCCGAAATTCAG
AATAATGCAAACTTTAACAGATAATATCAATAGGATTTTGCGTGAAAACTTGACAGGACTTGCAGTTATCAGAGCGTATA
ATTCTGAAGAATTTAGAGAAGGAAAGTTTGAAGAAGCAAATGTTGAATTGACAAATACTCAACTGTTCACAAGTCGTGCA
ATGAGTACAATGTTTCCTGCAATTAATTTGGGGATGTCTGTTCTAACTCTTGTGATTTATTTTATCGGAGCAGGACTTAT
CAACGCCGCAGGGATGATGGACAAATACGTTTTGTTCTCAAATATGGTTGTGTTCAGTTCGTATGCAATGCAAGTTGTCA
TGTCATTTATGATGATGAGTATGATATTCATAATGATTCCAAGAGCACAAATCTCTGCCAATCGTATCAACGAAGTGTTG
GATACAGAGCTTTCAATTAAAGATGGAGATGTTGATACATCAAATGAAGATTACGAATATGAAATTGAGTTTGACAATGT
ATCATTCAAATACACAGATTCCGAGCAATATATTTTAAAGGATATTGATTTTAAGGTGAAAAAAGGAGAAAAGGTAGCTA
TAATAGGCTCCACAGGATCTGGTAAAAGCACTATATTGAATTTGCTTTTGAGATTTTACGATGCAACTGAAGGTGTCGTA
AAAATCCAAGGAATCGACATTAGAAAGTATAAGCTTAAATTTTTGTACGAAAAAATAGGCGCCGTTTTCCAAAAATCATT
CCTTTTCAAAGGAAATGTAAAATCTAACATTTCATTCTCAGAAGATGGTATGGATAACGAAAAGATCGAACAAGCGGCAG
ATACTTCACAATCAATGGAGTTTATCGACAAATTTGACGAAAAATTTGACCACGAAATCGCGCAATTAGGCAAGAATGTT
TCTGGTGGACAAAAACAGAGATTATCCATTGCAAGGGCAGTCTACAAAAAACCAAATATATTCTTGTTTGATGATAGTTT
TTCCGCTCTTGATTTCAAAACAGACAGTGAACTTAGACATCAATTGAGAGAAAACAACCCTGATGCCACGACAATTATTG
TCGCACAAAGAGTGGGATCAATCATGGATTCAGATCAAATAATCGTACTTGAAAACGGACAAATCGTAGGTATCGGTAAA
CACAAAGATTTATTGAAAAATTGTGAAGTGTACAGTGAAATAGCCTACTCGCAATTAACGGAGGAGGAATTAAATGCCTA
G

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(20-296)

ABC transporter (ABC_tran)

(359-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.819

100

0.486

Multiple sequence alignment