Detailed information NTG0105974

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: DK42_RS10885
• Genome accession: NZ_CP007571
• Coordinates: 2188022..2189131 (+)
• Length: 369 a.a.
• NCBI ID: WP_000264865.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain GBS2-NM
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2183022..2194131

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK42_RS10860 (DK42_11020)	-	2183394..2184233 (-)	840	WP_000181757.1	energy-coupling factor ABC transporter ATP-binding protein	-
DK42_RS10865 (DK42_11025)	pgsA	2184233..2184775 (-)	543	WP_000239225.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
DK42_RS10870 (DK42_11030)	-	2184898..2186181 (-)	1284	WP_000217756.1	pitrilysin family protein	-
DK42_RS10875 (DK42_11035)	-	2186183..2187427 (-)	1245	WP_000706187.1	pitrilysin family protein	-
DK42_RS10880 (DK42_11040)	yaaA	2187666..2188019 (+)	354	WP_000384868.1	S4 domain-containing protein YaaA	-
DK42_RS10885 (DK42_11045)	recF	2188022..2189131 (+)	1110	WP_000264865.1	DNA replication/repair protein RecF	Machinery gene
DK42_RS10890 (DK42_11050)	-	2189241..2190653 (+)	1413	WP_017771557.1	IS1182 family transposase	-
DK42_RS10895 (DK42_11055)	ltrA	2190703..2191980 (-)	1278	WP_001292556.1	group II intron reverse transcriptase/maturase	-
DK42_RS10900 (DK42_11060)	-	2192564..2193430 (-)	867	WP_000398683.1	GRP family sugar transporter	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42512.33 Da
• Isoelectric Point: 7.3132

>NTDB_id=105974 DK42_RS10885 WP_000264865.1 2188022..2189131(+) (recF) [Streptococcus agalactiae strain GBS2-NM]
MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVHFKHHDVQITGEVIRKSGH
LNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVLFAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQR
NTYLKTTNNVDKTFLTVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLN
QLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFGSQGQQRSLILSLKLAEIELIKTVTNDYPILLLDDVMSELDNHRQ
LKLLEGIKENVQTFITTTSLEHLSALPDQLKIFNVSDGTISINEKKATD

Nucleotide

• Length: 1110 bp

>NTDB_id=105974 DK42_RS10885 WP_000264865.1 2188022..2189131(+) (recF) [Streptococcus agalactiae strain GBS2-NM]
ATGTGGATAAAAAATATTTCTTTAAAACATTATCGTAATTATGAAGAAGCACAAGTAGATTTTTCACCCAACCTCAATAT
TTTCATTGGCCGCAATGCTCAAGGAAAGACAAATTTTTTAGAAGCAATCTACTTCTTGGCTTTGACTCGAAGTCACCGTA
CCCGTTCTGATAAAGAACTTGTACATTTTAAACACCATGATGTACAAATTACAGGTGAGGTAATCCGCAAAAGTGGCCAT
CTTAACTTAGATATTCAATTATCTGAAAAAGGAAGAATCACTAAAGTTAACCATCTTAAACAGGCAAAATTATCTGATTA
TATTGGGGCTATGACTGTCGTACTTTTTGCCCCTGAAGATCTTCAATTAGTTAAAGGTGCACCTAGTCTAAGACGAAAAT
TTTTAGATATAGATATTGGACAAATTAAGCCAACGTACTTAGCTGAACTTTCAAATTACAATCATGTATTAAAACAAAGA
AACACTTATCTAAAAACTACTAATAACGTCGACAAAACTTTTTTAACAGTCCTTGATGAACAATTAGCTGATTATGGAAG
TCGTGTCATTGAACACCGTTTTGATTTTATCCAAGCCCTAAATGATGAAGCGGACAAACATCACTACATTATCAGTACTG
AGTTAGAACATTTATCTATTCACTACAAATCGTCAATAGAGTTTACAGATAAGTCAAGTATTAGGGAACATTTTTTAAAC
CAATTATCTAAAAGCCACTCAAGAGACATCTTTAAGAAAAACACAAGCATCGGACCTCATCGTGATGATATTACTTTCTT
TATTAATGATATCAATGCTACTTTTGGTAGCCAAGGGCAACAAAGAAGCCTTATTTTATCATTGAAATTAGCAGAAATTG
AGCTAATAAAAACCGTTACCAACGATTATCCGATTCTCTTACTTGACGACGTCATGAGTGAACTTGACAACCATCGTCAA
CTAAAACTCTTAGAGGGAATCAAAGAGAATGTTCAAACATTTATTACTACAACAAGTTTAGAACATTTAAGTGCTTTACC
TGATCAACTCAAAATCTTTAACGTTAGTGATGGTACTATTAGTATTAATGAAAAAAAAGCAACAGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.361	98.374	0.623
recF	Bacillus subtilis subsp. subtilis str. 168	44.837	99.729	0.447