Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACFKHK_RS05780 Genome accession   NZ_CP170760
Coordinates   1095976..1097202 (-) Length   408 a.a.
NCBI ID   WP_171989798.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090976..1102202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS05750 - 1091310..1091453 (-) 144 Protein_1095 excalibur calcium-binding domain-containing protein -
  ACFKHK_RS05755 - 1091472..1092599 (-) 1128 WP_392461339.1 calcium-binding protein -
  ACFKHK_RS05760 - 1092731..1092913 (+) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  ACFKHK_RS05765 lepA 1092963..1094795 (-) 1833 WP_171989796.1 translation elongation factor 4 -
  ACFKHK_RS05770 ndk 1094893..1095306 (-) 414 WP_171989797.1 nucleoside-diphosphate kinase -
  ACFKHK_RS05775 yihA 1095328..1095915 (-) 588 WP_130555334.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACFKHK_RS05780 clpX 1095976..1097202 (-) 1227 WP_171989798.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACFKHK_RS05785 - 1097400..1097912 (-) 513 WP_105105845.1 dihydrofolate reductase -
  ACFKHK_RS05790 - 1098123..1098962 (-) 840 WP_105105844.1 thymidylate synthase -
  ACFKHK_RS05795 - 1099015..1099317 (-) 303 WP_392461342.1 hypothetical protein -
  ACFKHK_RS05800 - 1099330..1099608 (-) 279 WP_392461344.1 hypothetical protein -
  ACFKHK_RS05805 - 1099733..1100692 (-) 960 WP_392461346.1 ROK family glucokinase -
  ACFKHK_RS05810 - 1100854..1101189 (-) 336 WP_171989804.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45477.05 Da        Isoelectric Point: 4.5673

>NTDB_id=1059265 ACFKHK_RS05780 WP_171989798.1 1095976..1097202(-) (clpX) [Streptococcus parasuis strain FZ2]
MAVKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQVDTKN
ILFIVGGAFDGIEEIIKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVLAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDNVELEFDQDALEEIAKKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1059265 ACFKHK_RS05780 WP_171989798.1 1095976..1097202(-) (clpX) [Streptococcus parasuis strain FZ2]
ATGGCTGTCAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAACCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTTC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGACAAGATCGTGCT
AAACGTGCATTGGCAGTGGCTGTTTATAATCACTACAAACGTATTAATTTCCAAGATAGTCGCGATGAAAATGATGTTGA
TTTGCAAAAATCTAACATCTTGATGATTGGCCCGACTGGTTCAGGAAAAACTTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCTGGTTATGTGGGTGAAGATGTTGAAAATATTTTA
CTTAAATTATTGCAGGCAGCAGATTTTAACATTGACCGTGCTGAAAGAGGTATCATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGATGTCTCGGGTGAAGGTGTCCAACAAGCTCTCTTAAAAATTATTG
AAGGAACCGTTGCTAGTGTACCTCCACAAGGTGGACGAAAACACCCTAATCAAGAAATGATTCAAGTCGATACGAAAAAC
ATTCTTTTCATCGTTGGCGGTGCGTTTGATGGTATCGAGGAAATTATTAAGCAACGATTAGGAGAGAAAATCATTGGTTT
TGGTCAAAACAATCGTGCTATTGATGAAAAAGAATCATACATGCAACATATCATTGCTGATGATATTCAAAAATTTGGTA
TTATTCCTGAGTTGATTGGACGATTACCTGTTTTGGCAGCCTTAGACCAATTAACGACAGAGGATTTGATTCGTATTTTG
ACTGAGCCGAAGAATGCTTTGGTAAAACAGTACCAAACTCTTTTATCCTACGATAATGTGGAGTTAGAATTTGACCAGGA
TGCCTTGGAGGAAATTGCCAAAAAGGCTATTGAACGGAAAACAGGTGCACGGGGGCTTCGTTCGATTATTGAAGAAACCA
TGATGGATGTGATGTTTGAAGTTCCTAGTCAAGAGAATGTAAAACGTGTTCGTGTTACAAAAGATGCAGTAGATGGTAAG
GAAAAACCTTTGCTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

83.863

100

0.841
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.529

0.569

Multiple sequence alignment