Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   ACFKHK_RS02775 Genome accession   NZ_CP170760
Coordinates   508809..509498 (+) Length   229 a.a.
NCBI ID   WP_171988934.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 503809..514498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS02750 - 504139..505482 (+) 1344 WP_392462500.1 DEAD/DEAH box helicase -
  ACFKHK_RS02755 - 505501..505725 (+) 225 WP_130554666.1 DUF4059 family protein -
  ACFKHK_RS02760 trxB 505738..506655 (+) 918 WP_172036292.1 thioredoxin-disulfide reductase -
  ACFKHK_RS02765 - 506665..507204 (+) 540 WP_174845818.1 DUF177 domain-containing protein -
  ACFKHK_RS02770 gndA 507300..508727 (+) 1428 WP_392462501.1 NADP-dependent phosphogluconate dehydrogenase -
  ACFKHK_RS02775 covR 508809..509498 (+) 690 WP_171988934.1 DNA-binding response regulator Regulator
  ACFKHK_RS02780 - 509578..510708 (+) 1131 WP_392462502.1 AI-2E family transporter -
  ACFKHK_RS02785 - 510910..512157 (+) 1248 WP_392462503.1 aminoacyltransferase -
  ACFKHK_RS02790 - 512135..513382 (+) 1248 WP_392462504.1 aminoacyltransferase -
  ACFKHK_RS02795 nrdR 513456..513947 (+) 492 WP_171988930.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26278.18 Da        Isoelectric Point: 5.4135

>NTDB_id=1059254 ACFKHK_RS02775 WP_171988934.1 508809..509498(+) (covR) [Streptococcus parasuis strain FZ2]
MAKKILIAGKERNLSHFVSMELQKKEYIVDYASTGKEALSLAHETDFDLVLMSFQLSDMSSKELAKELLAIKPATVMIVV
VEPTEVAEHGEDVLTYAVFYVVKPFVISDLVEQISDIFRGRDFIETNCKQVHLHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDVPGQASYIRTVRGFGYTMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1059254 ACFKHK_RS02775 WP_171988934.1 508809..509498(+) (covR) [Streptococcus parasuis strain FZ2]
ATGGCTAAGAAAATTTTGATTGCTGGGAAAGAGCGTAATCTTTCACATTTTGTTTCCATGGAACTTCAGAAGAAGGAGTA
TATCGTTGATTATGCTTCAACAGGGAAAGAAGCTTTATCACTAGCTCATGAGACAGACTTTGATTTGGTTTTGATGAGTT
TCCAATTATCCGATATGTCCAGCAAGGAGTTGGCTAAGGAGCTTCTTGCAATCAAACCTGCTACGGTGATGATTGTAGTT
GTCGAACCAACAGAAGTGGCTGAACATGGGGAAGATGTATTGACGTATGCGGTATTTTACGTTGTGAAGCCATTTGTTAT
TAGTGACTTGGTGGAACAAATTTCCGATATTTTCCGTGGTAGAGATTTTATTGAAACAAATTGTAAACAGGTTCATTTGC
ATGCGGCCTATCGAGATTTAAAAGTTGATTTTCAAAACCGAACGGTCACTCGGGGAGATGAGTTAATCAACTTGACACGG
CGAGAATATGATTTGCTGGCGACGTTGATGAATAGTCCGGAACCAGTTAGCCGAGAACAGCTTCTTGAACGGGTCTGGAA
GTATGAAGCGGCCTCTGAAACTAATGTTGTGGATGTCTATATCCGTTATCTTCGTGGAAAATTAGATGTTCCAGGACAGG
CTTCCTATATTCGGACGGTACGTGGTTTTGGCTATACCATGAGAGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.66

100

0.489
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.616

100

0.441

Multiple sequence alignment