Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   ACFKHK_RS01845 Genome accession   NZ_CP170760
Coordinates   340961..342253 (+) Length   430 a.a.
NCBI ID   WP_392462455.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335961..347253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS01820 - 336629..337270 (+) 642 WP_105126053.1 response regulator transcription factor -
  ACFKHK_RS01825 - 337322..338722 (+) 1401 WP_239604502.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ACFKHK_RS01830 - 338724..339089 (+) 366 WP_024391839.1 S1 RNA-binding domain-containing protein -
  ACFKHK_RS01835 cysK 339255..340181 (-) 927 WP_171989464.1 cysteine synthase A -
  ACFKHK_RS01840 - 340272..340904 (-) 633 WP_277940885.1 YigZ family protein -
  ACFKHK_RS01845 comFA/cflA 340961..342253 (+) 1293 WP_392462455.1 DEAD/DEAH box helicase Machinery gene
  ACFKHK_RS01850 - 342246..342911 (+) 666 WP_171989462.1 ComF family protein -
  ACFKHK_RS01855 hpf 342988..343527 (+) 540 WP_171989461.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 48620.18 Da        Isoelectric Point: 9.2611

>NTDB_id=1059252 ACFKHK_RS01845 WP_392462455.1 340961..342253(+) (comFA/cflA) [Streptococcus parasuis strain FZ2]
MNELENYHGRLFTKYQLTSEERKKAKTISSVVGKNSCFRCGTSFEEENKLPNAAYYCRACLLLGRVRTDEKLYYFPQKDF
SMNACLLWKGALTDWQQRISDGLVANVEKRQATLVHAVTGAGKTEMMYHAVASLINKGGAVCLASPRIDVCIELYKRLQN
DFSVPISLLHGKSDPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNPILYRAADNAVKVDGVLVFLTATSTDEL
DKKVRSGKLQKLSLPRRFHGNPLVVPQKVWFSKFDTYLKKNKLVPKLRNAIQKQRETGYPLLIFVPEISKGLEFATIMEQ
IFPEETIGFVSSQTDNRLEIVEGFRNKEITILISTTILERGVTFPGVDVIVVQANHYLYTSSSLVQISGRVGRSMDRPTG
LLLFFHEGSTRSIEKAIAEIKQMNKEAGYV

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=1059252 ACFKHK_RS01845 WP_392462455.1 340961..342253(+) (comFA/cflA) [Streptococcus parasuis strain FZ2]
ATGAATGAACTAGAGAATTACCATGGAAGACTTTTTACTAAATACCAATTAACGTCAGAAGAAAGAAAAAAAGCAAAAAC
AATTTCCAGTGTAGTAGGAAAGAATTCTTGTTTCCGATGCGGTACATCGTTTGAGGAAGAAAACAAGCTGCCAAATGCTG
CGTATTATTGTCGGGCTTGTCTCCTTTTGGGGAGAGTTCGAACAGATGAGAAACTCTACTATTTTCCACAGAAAGATTTT
TCAATGAATGCTTGTCTTCTGTGGAAGGGGGCGCTGACCGATTGGCAACAACGAATATCAGATGGACTAGTTGCGAATGT
GGAAAAACGGCAAGCAACTCTTGTTCATGCTGTAACAGGTGCGGGCAAAACGGAAATGATGTACCATGCTGTTGCATCAC
TAATTAATAAAGGAGGTGCTGTATGTCTAGCCAGTCCAAGAATTGATGTTTGTATTGAACTCTACAAGCGACTACAAAAT
GATTTTTCGGTCCCAATTAGTCTGCTACATGGGAAATCAGACCCATATTTCAGAACGCCACTCGTTGTTGCGACCACTCA
TCAGTTGTTAAAGTTCTACCAGGCATTTGATTTGGTCTTGATCGATGAAGTAGATGCTTTCCCCTATGCAGACAACCCTA
TATTATATCGAGCAGCAGATAATGCAGTTAAAGTAGACGGTGTTTTAGTATTTTTAACAGCAACCTCTACGGATGAATTA
GATAAAAAAGTCAGATCAGGTAAATTGCAAAAACTCAGTCTCCCTAGACGTTTTCATGGAAATCCGCTTGTGGTTCCGCA
AAAGGTCTGGTTTTCCAAATTCGATACATATTTGAAGAAAAATAAATTAGTTCCAAAACTCAGAAACGCCATTCAAAAGC
AAAGAGAAACAGGCTATCCATTACTTATTTTTGTACCAGAAATTTCGAAAGGATTGGAATTTGCAACCATAATGGAACAA
ATCTTTCCAGAAGAAACAATTGGTTTTGTATCAAGTCAGACAGACAATCGGCTTGAAATAGTTGAAGGATTTCGCAACAA
AGAAATTACAATTTTAATTTCTACTACAATCTTAGAGCGTGGTGTAACATTCCCAGGAGTAGATGTTATTGTTGTTCAAG
CCAATCACTACTTATACACGTCATCGAGTCTCGTGCAAATTTCAGGTCGGGTCGGAAGAAGTATGGACCGTCCGACGGGC
TTACTTCTGTTTTTTCATGAAGGAAGTACGCGGTCAATTGAAAAGGCAATTGCAGAAATCAAACAAATGAATAAGGAGGC
AGGTTATGTCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(92-165)

Helicase conserved C-terminal domain (Helicase_C)

(288-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

65.258

99.07

0.647
  comFA/cflA Streptococcus pneumoniae D39

65.258

99.07

0.647
  comFA/cflA Streptococcus pneumoniae R6

65.258

99.07

0.647
  comFA/cflA Streptococcus mitis NCTC 12261

65.258

99.07

0.647
  comFA/cflA Streptococcus pneumoniae TIGR4

65.258

99.07

0.647
  comFA/cflA Streptococcus mitis SK321

65.023

99.07

0.644
  comFA Lactococcus lactis subsp. cremoris KW2

50.735

94.884

0.481
  comFA Latilactobacillus sakei subsp. sakei 23K

37.063

99.767

0.37

Multiple sequence alignment