Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   ACFKHJ_RS02695 Genome accession   NZ_CP170759
Coordinates   508933..509622 (+) Length   229 a.a.
NCBI ID   WP_239604567.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 503933..514622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS02670 - 504263..505606 (+) 1344 WP_392452858.1 DEAD/DEAH box helicase -
  ACFKHJ_RS02675 - 505625..505849 (+) 225 WP_239604563.1 DUF4059 family protein -
  ACFKHJ_RS02680 trxB 505862..506779 (+) 918 WP_239604564.1 thioredoxin-disulfide reductase -
  ACFKHJ_RS02685 - 506789..507328 (+) 540 WP_174845818.1 DUF177 domain-containing protein -
  ACFKHJ_RS02690 gndA 507424..508851 (+) 1428 WP_392452859.1 NADP-dependent phosphogluconate dehydrogenase -
  ACFKHJ_RS02695 covR 508933..509622 (+) 690 WP_239604567.1 DNA-binding response regulator Regulator
  ACFKHJ_RS02700 - 509702..510829 (+) 1128 WP_239604568.1 AI-2E family transporter -
  ACFKHJ_RS02705 - 511035..512282 (+) 1248 WP_239604569.1 aminoacyltransferase -
  ACFKHJ_RS02710 - 512260..513507 (+) 1248 WP_239604570.1 aminoacyltransferase -
  ACFKHJ_RS02715 nrdR 513581..514072 (+) 492 WP_024391135.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26264.16 Da        Isoelectric Point: 5.4091

>NTDB_id=1059199 ACFKHJ_RS02695 WP_239604567.1 508933..509622(+) (covR) [Streptococcus parasuis strain FZ1]
MAKKILIAGKERNLSHFVSMELQKKEYIVDYASTGKEALSLAHETDFDLVLMSFQLSDMSSKELAKELLAIKPATVMIVV
VEPTEVADHGEDVLTYAVFYVVKPFVISDLVEQISDIFRGRDFIETNCKQVHLHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDVPGQASYIRTVRGFGYTMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1059199 ACFKHJ_RS02695 WP_239604567.1 508933..509622(+) (covR) [Streptococcus parasuis strain FZ1]
ATGGCTAAGAAAATTTTGATTGCTGGGAAAGAGCGTAATCTTTCACATTTTGTTTCCATGGAACTTCAGAAGAAGGAGTA
TATCGTTGATTATGCTTCAACAGGGAAAGAAGCTTTATCACTAGCTCATGAGACAGACTTTGATTTGGTTTTGATGAGTT
TCCAATTATCCGATATGTCCAGCAAGGAGTTGGCTAAGGAGCTTCTTGCAATCAAACCTGCTACGGTGATGATTGTAGTT
GTCGAACCAACAGAAGTGGCTGACCATGGGGAAGATGTATTGACGTATGCGGTATTTTACGTTGTGAAGCCATTTGTTAT
TAGTGACTTGGTGGAACAAATTTCCGATATTTTCCGTGGTAGAGATTTTATTGAAACAAATTGTAAACAAGTTCATTTGC
ATGCGGCCTATCGAGATTTAAAAGTTGATTTTCAAAACCGAACGGTCACTCGGGGAGATGAGTTAATCAACTTGACACGG
CGAGAATATGATTTGCTGGCGACGTTGATGAATAGTCCGGAACCAGTTAGCCGAGAACAGCTTCTTGAACGGGTCTGGAA
GTATGAAGCGGCCTCTGAAACCAATGTTGTGGATGTCTATATCCGTTATCTTCGTGGAAAATTAGATGTTCCAGGACAGG
CTTCCTATATTCGGACGGTACGTGGTTTTGGCTATACCATGAGAGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.085

100

0.493
  covR Lactococcus lactis subsp. lactis strain DGCC12653

42.373

100

0.437

Multiple sequence alignment