Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   AABA08_RS09340 Genome accession   NZ_AP028602
Coordinates   1824163..1825116 (-) Length   317 a.a.
NCBI ID   WP_000345080.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1819163..1830116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS09310 (TKY092604_18110) - 1819924..1820547 (-) 624 WP_000932636.1 hypothetical protein -
  AABA08_RS09315 (TKY092604_18120) jag 1820598..1821584 (-) 987 WP_000260015.1 RNA-binding cell elongation regulator Jag/EloR -
  AABA08_RS09320 (TKY092604_18130) - 1821603..1822427 (-) 825 WP_000727909.1 membrane protein insertase YidC -
  AABA08_RS09325 (TKY092604_18140) rnpA 1822402..1822773 (-) 372 WP_000739246.1 ribonuclease P protein component -
  AABA08_RS09330 - 1822790..1822921 (-) 132 WP_000768904.1 hypothetical protein -
  AABA08_RS09335 (TKY092604_18150) - 1822922..1824112 (-) 1191 WP_000167769.1 acetate kinase -
  AABA08_RS09340 (TKY092604_18160) comYH 1824163..1825116 (-) 954 WP_000345080.1 class I SAM-dependent methyltransferase Machinery gene
  AABA08_RS09345 - 1825177..1825771 (-) 595 Protein_1816 class I SAM-dependent methyltransferase -
  AABA08_RS09350 (TKY092604_18190) comGG/cglG 1825874..1826320 (-) 447 WP_001842224.1 competence type IV pilus minor pilin ComGG Machinery gene
  AABA08_RS09355 comGF/cglF 1826298..1826759 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  AABA08_RS09360 (TKY092604_18210) comGE/cglE 1826722..1827024 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  AABA08_RS09365 (TKY092604_18220) comGD/cglD 1826987..1827391 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  AABA08_RS09370 (TKY092604_18230) comGC/cglC 1827384..1827710 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  AABA08_RS09375 (TKY092604_18240) comGB/cglB 1827712..1828728 (-) 1017 WP_078102766.1 competence type IV pilus assembly protein ComGB Machinery gene
  AABA08_RS09380 (TKY092604_18250) comGA/cglA/cilD 1828676..1829617 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  AABA08_RS09385 (TKY092604_18260) - 1829693..1830058 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35728.98 Da        Isoelectric Point: 4.2474

>NTDB_id=105914 AABA08_RS09340 WP_000345080.1 1824163..1825116(-) (comYH) [Streptococcus pneumoniae strain PF2]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQVNHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=105914 AABA08_RS09340 WP_000345080.1 1824163..1825116(-) (comYH) [Streptococcus pneumoniae strain PF2]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAACTAGAACAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGTCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGTATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment