Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACF3DW_RS09800 Genome accession   NZ_CP170746
Coordinates   2242854..2244380 (-) Length   508 a.a.
NCBI ID   WP_016872550.1    Uniprot ID   A0A433NNT8
Organism   Chlorogloeopsis fritschii PCC 6912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2237854..2249380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3DW_RS09780 (ACF3DW_09780) - 2237855..2238748 (-) 894 WP_016872546.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  ACF3DW_RS09785 (ACF3DW_09785) - 2239044..2241476 (+) 2433 WP_016872547.1 ATP-binding cassette domain-containing protein -
  ACF3DW_RS09790 (ACF3DW_09790) - 2241752..2241988 (+) 237 WP_016872548.1 hypothetical protein -
  ACF3DW_RS09795 (ACF3DW_09795) - 2242010..2242741 (-) 732 WP_026087303.1 Uma2 family endonuclease -
  ACF3DW_RS09800 (ACF3DW_09800) radA 2242854..2244380 (-) 1527 WP_016872550.1 DNA repair protein RadA Machinery gene
  ACF3DW_RS09805 (ACF3DW_09805) rpaB 2244552..2245280 (+) 729 WP_016872551.1 response regulator transcription factor RpaB -
  ACF3DW_RS09810 (ACF3DW_09810) - 2245452..2246108 (+) 657 WP_392408525.1 cofactor assembly of complex C subunit B -
  ACF3DW_RS09815 (ACF3DW_09815) - 2246282..2246800 (+) 519 WP_016872553.1 DUF456 domain-containing protein -
  ACF3DW_RS09820 (ACF3DW_09820) - 2247036..2248355 (-) 1320 WP_016872554.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54826.56 Da        Isoelectric Point: 4.9459

>NTDB_id=1059126 ACF3DW_RS09800 WP_016872550.1 2242854..2244380(-) (radA) [Chlorogloeopsis fritschii PCC 6912]
MPKQKTYYVCNECGAESPQWFGKCPACGTYNSLEEQIAIQSSTDIPSRGVSAWHSQQGTSKSANKPAKPRASLKFDQISD
RQVTRWASGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNELAQRYRILYVSGEESGQQVKLRASRLGVTPTLN
VVGDDNGKSKVAEETVHLQESDEESADLYVLPETDLEEILKEMDSLKPNLTVIDSIQTVFFPALTSAPGSVAQVRECTAA
LMKVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVENGLREVPNP
SELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRSATGVDYNRLVQILAVLEKRVGIPMSKLDSYVASA
GGLNVEEPAVDLGVAIALVASFRDRIVDPGTVLIGEVGLGGQVRAVSQMELRLKEAAKLGFKRAIVPKGQKFPDLNIEIL
PVAKVIDAIIAAIPQHTLEDSDLEPDED

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1059126 ACF3DW_RS09800 WP_016872550.1 2242854..2244380(-) (radA) [Chlorogloeopsis fritschii PCC 6912]
ATGCCAAAGCAAAAAACTTATTACGTTTGTAACGAATGTGGAGCAGAATCTCCTCAATGGTTTGGGAAATGTCCAGCTTG
CGGCACATATAACTCTCTAGAAGAGCAAATTGCCATCCAATCTTCAACGGATATACCAAGTCGAGGAGTGAGTGCTTGGC
ACTCTCAACAGGGAACAAGTAAATCAGCAAATAAACCAGCCAAGCCACGAGCATCTTTAAAATTCGACCAAATTAGCGAT
CGCCAAGTCACGCGTTGGGCTTCTGGTTATGGAGAACTAGATCGAGTATTGGGCGGTGGTGTTGTTCCCGGCTCGATGGT
ATTAATTGGTGGCGATCCTGGTATAGGTAAATCTACTTTATTATTACAAGTATCAAATGAACTAGCACAAAGATACCGCA
TCTTATATGTTTCTGGAGAAGAATCAGGACAACAAGTAAAATTGAGAGCTTCACGCTTGGGAGTAACACCAACTCTTAAT
GTTGTAGGTGATGACAACGGTAAAAGCAAAGTAGCAGAAGAAACCGTACATCTACAAGAATCTGATGAAGAAAGCGCAGA
TTTATATGTATTACCGGAAACAGATTTGGAAGAGATTTTAAAGGAAATGGACTCTCTCAAACCGAATCTAACGGTGATTG
ATAGTATTCAAACCGTATTCTTTCCTGCACTTACCTCTGCGCCTGGTTCGGTAGCGCAGGTACGCGAATGTACCGCCGCT
TTGATGAAGGTGGCAAAGCACGAAGACATCACCATGTTAATTGTGGGACACGTCACCAAAGAAGGAGCGATCGCCGGGCC
GAAAGTTTTAGAACACTTGGTAGATACCGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGGTTATTACGCACGG
TGAAAAACCGTTTTGGTGCCACCCACGAAATTGGCATTTTTGAAATGGTAGAAAATGGGTTGCGAGAAGTTCCCAATCCC
TCAGAATTATTTTTGGGCAACCGCGACGATCCCGCTCCCGGTACGGCAATTGTAGTGGCTTGCGAAGGAACGCGCCCCAT
CGTTGTGGAATTACAAGCACTGGTAAGCCCCACTAGTTATCCTTCTCCCCGGCGTTCCGCTACAGGCGTGGATTACAATC
GTCTCGTGCAAATTCTCGCCGTATTGGAAAAGAGAGTAGGAATTCCCATGTCTAAATTAGATTCCTATGTAGCTTCCGCT
GGCGGGTTGAATGTAGAAGAACCAGCAGTCGATTTGGGAGTAGCGATCGCCCTTGTTGCTAGTTTTCGCGATCGGATTGT
AGATCCCGGCACTGTGCTTATTGGCGAAGTCGGGTTAGGCGGGCAAGTACGTGCTGTCTCACAAATGGAGTTGCGGTTGA
AAGAAGCGGCAAAACTGGGATTTAAGCGAGCGATCGTTCCGAAAGGGCAAAAATTTCCTGACTTAAATATTGAGATTTTG
CCAGTGGCAAAAGTAATAGATGCGATTATTGCCGCCATCCCGCAGCATACACTGGAAGATTCTGATTTAGAACCAGACGA
GGATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(403-468)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(91-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433NNT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.798

97.244

0.484
  radA Streptococcus mitis SK321

45.902

96.063

0.441
  radA Streptococcus pneumoniae Rx1

47.222

92.126

0.435
  radA Streptococcus pneumoniae D39

47.222

92.126

0.435
  radA Streptococcus pneumoniae R6

47.222

92.126

0.435
  radA Streptococcus pneumoniae TIGR4

47.222

92.126

0.435
  radA Streptococcus mitis NCTC 12261

47.222

92.126

0.435

Multiple sequence alignment