Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ACFXAC_RS17770 Genome accession   NZ_CP170720
Coordinates   3642637..3642756 (+) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3637637..3647756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS17750 (ACFXAC_17750) narK 3637796..3638986 (-) 1191 WP_007407632.1 nitrate transporter NarK -
  ACFXAC_RS17755 (ACFXAC_17755) argS 3639121..3640791 (-) 1671 WP_053573959.1 arginine--tRNA ligase -
  ACFXAC_RS17760 (ACFXAC_17760) - 3640788..3641216 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  ACFXAC_RS17765 (ACFXAC_17765) rapF 3641508..3642653 (+) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  ACFXAC_RS17770 (ACFXAC_17770) phrF 3642637..3642756 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ACFXAC_RS17775 (ACFXAC_17775) - 3642954..3643157 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  ACFXAC_RS17780 (ACFXAC_17780) - 3643171..3643374 (+) 204 WP_007407641.1 hypothetical protein -
  ACFXAC_RS17785 (ACFXAC_17785) - 3643409..3643594 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  ACFXAC_RS17790 (ACFXAC_17790) - 3643782..3644063 (+) 282 WP_007407643.1 hypothetical protein -
  ACFXAC_RS17795 (ACFXAC_17795) - 3644107..3644619 (+) 513 WP_053573958.1 stage II sporulation protein M -
  ACFXAC_RS17800 (ACFXAC_17800) - 3645210..3645428 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  ACFXAC_RS17805 (ACFXAC_17805) speB 3645596..3646468 (-) 873 WP_007407646.1 agmatinase -
  ACFXAC_RS17810 (ACFXAC_17810) speE 3646527..3647357 (-) 831 WP_053573957.1 spermidine synthase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=1058848 ACFXAC_RS17770 WP_015240778.1 3642637..3642756(+) (phrF) [Bacillus amyloliquefaciens strain JP5006]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1058848 ACFXAC_RS17770 WP_015240778.1 3642637..3642756(+) (phrF) [Bacillus amyloliquefaciens strain JP5006]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment