Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACFXAC_RS11760 Genome accession   NZ_CP170720
Coordinates   2461730..2462065 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2456730..2467065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS11740 (ACFXAC_11740) gcvT 2457336..2458436 (-) 1101 WP_053573200.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFXAC_RS11745 (ACFXAC_11745) - 2458860..2460530 (+) 1671 WP_031378948.1 DEAD/DEAH box helicase -
  ACFXAC_RS11750 (ACFXAC_11750) - 2460552..2461346 (+) 795 WP_007408330.1 YqhG family protein -
  ACFXAC_RS11755 (ACFXAC_11755) sinI 2461523..2461696 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACFXAC_RS11760 (ACFXAC_11760) sinR 2461730..2462065 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACFXAC_RS11765 (ACFXAC_11765) tasA 2462113..2462898 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  ACFXAC_RS11770 (ACFXAC_11770) sipW 2462963..2463547 (-) 585 WP_015240205.1 signal peptidase I SipW -
  ACFXAC_RS11775 (ACFXAC_11775) tapA 2463519..2464190 (-) 672 WP_053573199.1 amyloid fiber anchoring/assembly protein TapA -
  ACFXAC_RS11780 (ACFXAC_11780) - 2464449..2464778 (+) 330 WP_039254490.1 DUF3889 domain-containing protein -
  ACFXAC_RS11785 (ACFXAC_11785) - 2464818..2464997 (-) 180 WP_003153093.1 YqzE family protein -
  ACFXAC_RS11790 (ACFXAC_11790) comGG 2465054..2465431 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACFXAC_RS11795 (ACFXAC_11795) comGF 2465432..2465932 (-) 501 WP_256052909.1 competence type IV pilus minor pilin ComGF -
  ACFXAC_RS11800 (ACFXAC_11800) comGE 2465841..2466155 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  ACFXAC_RS11805 (ACFXAC_11805) comGD 2466139..2466576 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACFXAC_RS11810 (ACFXAC_11810) comGC 2466566..2466874 (-) 309 WP_079979070.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1058816 ACFXAC_RS11760 WP_003153104.1 2461730..2462065(+) (sinR) [Bacillus amyloliquefaciens strain JP5006]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1058816 ACFXAC_RS11760 WP_003153104.1 2461730..2462065(+) (sinR) [Bacillus amyloliquefaciens strain JP5006]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment