Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACFW98_RS15645 Genome accession   NZ_CP170719
Coordinates   3258742..3259695 (+) Length   317 a.a.
NCBI ID   WP_059366593.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3253742..3264695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS15620 (ACFW98_15620) - 3253788..3255221 (+) 1434 WP_162992601.1 HAMP domain-containing sensor histidine kinase -
  ACFW98_RS15625 (ACFW98_15625) rapC 3255374..3256522 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  ACFW98_RS15630 (ACFW98_15630) phrC 3256506..3256625 (+) 120 WP_033575081.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ACFW98_RS15635 (ACFW98_15635) - 3256774..3256884 (-) 111 WP_369719092.1 YjcZ family sporulation protein -
  ACFW98_RS15640 (ACFW98_15640) - 3256964..3258328 (-) 1365 WP_059366589.1 aspartate kinase -
  ACFW98_RS15645 (ACFW98_15645) ceuB 3258742..3259695 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  ACFW98_RS15650 (ACFW98_15650) - 3259685..3260632 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  ACFW98_RS15655 (ACFW98_15655) - 3260626..3261384 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  ACFW98_RS15660 (ACFW98_15660) - 3261406..3262350 (+) 945 WP_095352402.1 siderophore ABC transporter substrate-binding protein -
  ACFW98_RS15665 (ACFW98_15665) - 3262392..3263816 (-) 1425 WP_025284231.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=1058761 ACFW98_RS15645 WP_059366593.1 3258742..3259695(+) (ceuB) [Bacillus amyloliquefaciens strain JP5008]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1058761 ACFW98_RS15645 WP_059366593.1 3258742..3259695(+) (ceuB) [Bacillus amyloliquefaciens strain JP5008]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536

Multiple sequence alignment