Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ACFXAA_RS19185 | Genome accession | NZ_CP170717 |
| Coordinates | 3905851..3906117 (+) | Length | 88 a.a. |
| NCBI ID | WP_050515801.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain JP5014 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3900851..3911117
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFXAA_RS19165 (ACFXAA_19165) | - | 3901120..3902421 (-) | 1302 | WP_012117986.1 | hemolysin family protein | - |
| ACFXAA_RS19170 (ACFXAA_19170) | - | 3902567..3903517 (+) | 951 | WP_015417820.1 | magnesium transporter CorA family protein | - |
| ACFXAA_RS19175 (ACFXAA_19175) | comGA | 3903710..3904780 (+) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ACFXAA_RS19180 (ACFXAA_19180) | comGB | 3904767..3905804 (+) | 1038 | WP_395135501.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ACFXAA_RS19185 (ACFXAA_19185) | comGC | 3905851..3906117 (+) | 267 | WP_050515801.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ACFXAA_RS19190 (ACFXAA_19190) | comGD | 3906107..3906544 (+) | 438 | WP_395135502.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ACFXAA_RS19195 (ACFXAA_19195) | comGE | 3906528..3906842 (+) | 315 | WP_094032244.1 | competence type IV pilus minor pilin ComGE | - |
| ACFXAA_RS19200 (ACFXAA_19200) | comGF | 3906751..3907251 (+) | 501 | WP_258566475.1 | competence type IV pilus minor pilin ComGF | - |
| ACFXAA_RS19205 (ACFXAA_19205) | comGG | 3907252..3907629 (+) | 378 | WP_015417814.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ACFXAA_RS19210 (ACFXAA_19210) | - | 3907686..3907865 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| ACFXAA_RS19215 (ACFXAA_19215) | - | 3907905..3908234 (-) | 330 | WP_060674607.1 | DUF3889 domain-containing protein | - |
| ACFXAA_RS19220 (ACFXAA_19220) | tapA | 3908493..3909164 (+) | 672 | WP_060674605.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ACFXAA_RS19225 (ACFXAA_19225) | sipW | 3909136..3909720 (+) | 585 | WP_061860711.1 | signal peptidase I SipW | - |
| ACFXAA_RS19230 (ACFXAA_19230) | tasA | 3909785..3910570 (+) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
| ACFXAA_RS19235 (ACFXAA_19235) | sinR | 3910618..3910953 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9749.37 Da Isoelectric Point: 6.2027
>NTDB_id=1058695 ACFXAA_RS19185 WP_050515801.1 3905851..3906117(+) (comGC) [Bacillus amyloliquefaciens strain JP5014]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTVCPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTVCPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=1058695 ACFXAA_RS19185 WP_050515801.1 3905851..3906117(+) (comGC) [Bacillus amyloliquefaciens strain JP5014]
ATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGTCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGTCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
76.056 |
80.682 |
0.614 |