Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACFXAA_RS14100 Genome accession   NZ_CP170717
Coordinates   2910457..2911146 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2905457..2916146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS14080 (ACFXAA_14080) - 2905962..2907038 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  ACFXAA_RS14085 (ACFXAA_14085) - 2907128..2908342 (-) 1215 WP_015418337.1 LCP family protein -
  ACFXAA_RS14090 (ACFXAA_14090) - 2908347..2908994 (-) 648 WP_007407485.1 YigZ family protein -
  ACFXAA_RS14095 (ACFXAA_14095) degS 2909217..2910380 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACFXAA_RS14100 (ACFXAA_14100) degU 2910457..2911146 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACFXAA_RS14105 (ACFXAA_14105) - 2911244..2912092 (+) 849 WP_015418336.1 DegV family protein -
  ACFXAA_RS14110 (ACFXAA_14110) comFA 2912200..2913585 (+) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  ACFXAA_RS14115 (ACFXAA_14115) - 2913643..2913927 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  ACFXAA_RS14120 (ACFXAA_14120) comFC 2913933..2914622 (+) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  ACFXAA_RS14125 (ACFXAA_14125) - 2914696..2915115 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  ACFXAA_RS14130 (ACFXAA_14130) flgM 2915185..2915451 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACFXAA_RS14135 (ACFXAA_14135) - 2915466..2915948 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1058672 ACFXAA_RS14100 WP_003219701.1 2910457..2911146(+) (degU) [Bacillus amyloliquefaciens strain JP5014]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1058672 ACFXAA_RS14100 WP_003219701.1 2910457..2911146(+) (degU) [Bacillus amyloliquefaciens strain JP5014]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment