Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   ACFXAA_RS05725 Genome accession   NZ_CP170717
Coordinates   1247150..1247341 (-) Length   63 a.a.
NCBI ID   WP_395135724.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1242150..1252341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS05700 (ACFXAA_05700) - 1242508..1243494 (-) 987 WP_224463091.1 ABC transporter ATP-binding protein -
  ACFXAA_RS05705 (ACFXAA_05705) - 1243668..1244453 (-) 786 WP_012117278.1 DUF2268 domain-containing protein -
  ACFXAA_RS05710 (ACFXAA_05710) fabF 1244536..1245774 (-) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  ACFXAA_RS05715 (ACFXAA_05715) - 1245797..1246735 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  ACFXAA_RS05720 (ACFXAA_05720) - 1246903..1247121 (+) 219 WP_007409123.1 hypothetical protein -
  ACFXAA_RS05725 (ACFXAA_05725) comZ 1247150..1247341 (-) 192 WP_395135724.1 ComZ family protein Regulator
  ACFXAA_RS05730 (ACFXAA_05730) med 1247354..1248307 (-) 954 WP_015417205.1 BMP family ABC transporter substrate-binding protein Regulator
  ACFXAA_RS05735 (ACFXAA_05735) - 1248397..1248963 (-) 567 WP_015417204.1 NAD(P) binding enzyme -
  ACFXAA_RS05740 (ACFXAA_05740) - 1249046..1249780 (-) 735 WP_015417203.1 hypothetical protein -
  ACFXAA_RS05745 (ACFXAA_05745) - 1250041..1250226 (+) 186 WP_003155069.1 YjzD family protein -
  ACFXAA_RS05750 (ACFXAA_05750) - 1250263..1250442 (-) 180 WP_003155070.1 YjzC family protein -
  ACFXAA_RS05755 (ACFXAA_05755) argF 1250518..1251489 (-) 972 WP_395135726.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7189.30 Da        Isoelectric Point: 4.2103

>NTDB_id=1058640 ACFXAA_RS05725 WP_395135724.1 1247150..1247341(-) (comZ) [Bacillus amyloliquefaciens strain JP5014]
MQHEKSLEFMQIAMKYLPEAKADLEKSGIDLSMEMIQPFMDLFTSVMAEAYELGRSDAGELNK

Nucleotide


Download         Length: 192 bp        

>NTDB_id=1058640 ACFXAA_RS05725 WP_395135724.1 1247150..1247341(-) (comZ) [Bacillus amyloliquefaciens strain JP5014]
ATGCAGCATGAAAAGTCTCTTGAATTTATGCAGATCGCGATGAAATACCTGCCGGAAGCAAAGGCGGATCTTGAGAAATC
CGGCATAGATCTGTCTATGGAAATGATTCAGCCGTTTATGGACCTGTTTACATCGGTCATGGCGGAAGCGTATGAGCTTG
GCAGATCTGATGCCGGGGAGCTGAATAAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

86.207

92.063

0.794

Multiple sequence alignment